BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73700.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476510 jgi|Araly1|476510|fgenesh2_kg.2__1640__AT1G73700.1 2608 0.0
Ahg328320 jgi|Araly1|328320|fgenesh1_pm.C_scaffold_7000547 1103 0.0
Ahg949805 jgi|Araly1|949805|scaffold_801692.1 785 0.0
> Ahg476510 jgi|Araly1|476510|fgenesh2_kg.2__1640__AT1G73700.1
Length=1604
Score = 2608 bits (1412), Expect = 0.0
Identities = 1541/1605 (96%), Gaps = 2/1605 (0%)
Strand=Plus/Plus
Query 10 AGAGAGAAAATGGAAGATGGTGTGACGCCTCCGCTTCTGATCACAGAGAAAGACACGACG 69
||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1 AGAAAGAAAATGGAAGATGGTGTGACGCCTCCGCTTCTGATCACAGAGAGAGAGACGACG 60
Query 70 ATGATTCGTGTGAAGGAGGAGGTGAAGAAGCAGCTATGGCTTTCTGCTCCACTCATTGGT 129
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATGATTCGTGTGAAGGAGGAAGTGAAGAAGCAGCTATGGCTTTCTGCACCACTCATTGGT 120
Query 130 GTTAGCCTTCTTCAATACTCTCTCCAAGTCATCTCCGTCATGTTCGTTGGCCATCTTGGC 189
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 121 GTTAGCCTTCTTCAATACTCTCTCCAAGTCATCTCCGTCATGTTCGTCGGCCATCTCGGC 180
Query 190 TCTCTTCCTCTCTCTGCCGCCTCTATCGCCACCTCCTTTGCCTCCGTTACCGGCTTCACC 249
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 181 TCTCTTCCCCTCTCTGCCGCCTCTATCGCCACCTCCTTCGCCTCCGTCACCGGCTTCACC 240
Query 250 TTCCTCTTGGGAACAGCAAGTGCATTGGAGACACTATGTGGCCAAGCTTACGGAGCAAAA 309
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 TTCCTCTTGGGAACAGCGAGTGCATTGGAGACACTATGTGGCCAAGCGTACGGAGCAAAA 300
Query 310 CTATATGGAAAATTGGGAATTCAAATGCAGAGAGCAATGTTTGTACTTCTTATACTCTCT 369
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CTATACGGAAAATTGGGCATCCAAATGCAGAGAGCAATGTTTGTACTTCTAATACTCTCT 360
Query 370 GTTCCTCTCTCAATCATTTGGGCTAACACAGAACAGATTCTCGTATTGGTCCATCAAGAC 429
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GTTCCTCTCTCAATCATTTGGGCTAACACCGAACAGATTCTCGTATTGGTCCATCAAGAC 420
Query 430 AAGTCCATTGCAAGTGTTGCTGGCTCCTACGCTAAATACATGATCCCGAGCCTCTTCGCC 489
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 AAGTCCATTGCAAGTGTTGCTGGCTCCTACGCTAAATACATGATCCCGAGTCTCTTCGCC 480
Query 490 TACGGACTGCTTCAATGTATCAACAGGTTCTTGCAAGCGCAGAACAATGTGTTCCCTGTC 549
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 TACGGACTACTTCAATGCATCAACAGGTTCTTGCAAGCGCAGAACAATGTCTTCCCTGTC 540
Query 550 TTTGTCTGCTCTGGTATCACTACATGTCTTCATTTGCTTCTCTGTTGGTTGTTTGTGTTG 609
|||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||
Sbjct 541 TTTGTCTGCTCTGGTATCACCACTTGTCTTCATTTACTTCTCTGTTGGTTGTTTGTCTTG 600
Query 610 AAGACTGGTTTAGGATACAGAGGAGCTGCTCTTGCTATTTCGGTCTCTTACTGGTTCAAC 669
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 601 AAGACTGGTTTAGGATACAGAGGGGCTGCTCTCGCTATCTCGGTCTCTTACTGGTTCAAC 660
Query 670 GTCATTCTCCTCTCGTGTTATGTCAAGTTTTCGCCTTCTTGCTCGCATAGTTGGACCGGG 729
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTCATTCTCCTCTCATGTTATGTCAAGTTTTCGCCTTCTTGCTCGCATAGTTGGACCGGG 720
Query 730 TTTTCGAAA-GAGGCTTTTCAAGAACTTTATGATTTCTCTAAAATTGCTTTTCCTTCAGC 788
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTTC-AAAGGAGGCTTTTCAAGAACTTTATGATTTCTCTAAAATTGCTTTTCCTTCAGC 779
Query 789 GGTCATGGTCTGTTTGGAGCTTTGGTCCTTCGAGCTTCTGGTTCTTGCCTCAGGCCTTCT 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGTCATGGTCTGTTTGGAGCTTTGGTCCTTCGAGCTTCTGGTTCTTGCCTCAGGCCTTCT 839
Query 849 TCCTAACCCGGTTTTAGAAACTTCGGTGCTTTCAATCTGTCTAAATACTTCCCTAACAAT 908
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TCCTAATCCGGTTTTAGAAACTTCGGTGCTTTCAATCTGTCTAAATACTTCACTAACAAT 899
Query 909 CTGGCAGATTTCGGTTGGTCTTGGTGGCGCTGCAAGCATAAGGGTCTCAAACGAGTTAGG 968
||||||||| ||||||||||||||||| ||||| |||||||| ||||| || ||||||||
Sbjct 900 CTGGCAGATCTCGGTTGGTCTTGGTGGTGCTGCGAGCATAAGAGTCTCGAATGAGTTAGG 959
Query 969 AGCAGGGAATCCACAAGTGGCAAAACTGGCTGTATATGTCATTGTAGGCATAGCAGTAGC 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 AGCAGGGAATCCACAAGTGGCAAAACTGGCTGTATATGTCATTGTAGGCATAGCAGTTGC 1019
Query 1029 CGAGGGAATTGTGGTTGTAACAGTTTTGTTGTCGATTCGGAAGATCTTAGGTCATGCTTT 1088
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1020 CGAGGGAATTGTGGTGGTAACGGTTTTGTTGTCGATTCGAAAGATCTTAGGTCACGCTTT 1079
Query 1089 TAGCAGCGACCCGAAAATCATCGCATATGCCGCATCAATGATACCGATTGTTGCATGTGG 1148
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1080 TAGCAGTGACCCGAAAATCATCGCATATGCCGCATCAATGATACCAATAGTTGCATGTGG 1139
Query 1149 AAACTTCCTTGATGGCTTACAATGCGTACTCTCAGGGGTTGCTAGAGGATGTGGATGGCA 1208
|||||| ||||||||| | ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1140 AAACTTTCTTGATGGCCTCCAATGTGTTCTCTCAGGGGTTGCTAGAGGATGTGGATGGCA 1199
Query 1209 GAAAATTGGAGCATGTGTGAATCTTGGATCATATTATCTTGTTGGAGTTCCATTAGGATT 1268
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAAAATTGGAGCGTGTGTGAATCTTGGATCATATTATCTTGTTGGAGTTCCATTAGGATT 1259
Query 1269 GTTACTTGGTTTCCATTTCCACATTGGTGGTCGGGGGCTTTGGCTGGGAATCGTAACAGC 1328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ATTACTTGGTTTCCATTTCCACATTGGTGGTCGGGGGCTTTGGCTGGGAATCGTAACAGC 1319
Query 1329 ATTGTCTGTTCAAGTGTTGTGTCTTTCCTTAGTCACTATATTCACAAACTGGGATAAAGA 1388
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ATTGGCTGTTCAGGTGTTGTGTCTTTCCTTAGTCACTATATTCACAAACTGGGATAAAGA 1379
Query 1389 GGCAAAGAAAGCTACGAACAGAGTCGGATCTTCAGATGACAAAGATGGTGACGTCCAATG 1448
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1380 GGCAAAGAAAGCTACGAACAGAGTCGGGTCTTCAGATGACAAAGATGGTGACGCCCAATG 1439
Query 1449 ATCAATAAACGTCTGAGGAAAAAGCAGTTGCAAATGAGCTTAATGAGTGCTTTATTCTTG 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ATCAATAAACGTCTGAGGAAAAAGCAGTTGCAAATGAGCTTAATGAGTGCTTTATTCTTG 1499
Query 1509 TATGCCCATATGAACTTATTGGGAATTTCTAATTGATGTGGCCGTACATTGGTCTTTAGA 1568
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1500 TATGCCCATATGAACTTATTGGGAATTTCTAACTGATGTGGCCTTACATTGGTCTTTAGG 1559
Query 1569 AAACTTTACCATTGTTACATAGTTATTGAAATTCCTTGGATGTGT 1613
||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1560 AAACTTTACCATTGTTACATATTTATTGAAATTCCTTAGATGTGT 1604
> Ahg328320 jgi|Araly1|328320|fgenesh1_pm.C_scaffold_7000547
Length=1404
Score = 1103 bits (597), Expect = 0.0
Identities = 1100/1340 (82%), Gaps = 45/1340 (3%)
Strand=Plus/Plus
Query 77 GTGTGAAGGAGGAGGTGAAGAAGCAGCTATGGCTTTCTGCTCCACTCATTGGTGTTAGCC 136
|||| ||||| ||||||||||||||| | ||||| |||||||||||||| || || ||||
Sbjct 14 GTGTCAAGGAAGAGGTGAAGAAGCAGTTTTGGCTCTCTGCTCCACTCATCGGCGTCAGCC 73
Query 137 TTCTTCAATACTCTCTCCAAGTCATCTCCGTCATGTTCGTTGGCCATCTTGGCTCTCTTC 196
| || ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 74 TCCTCCAATATTCTCTCCAAGTTATCTCCGTCATGTTCGTCGGCCATCTCGGCTCTCTTC 133
Query 197 CTCTCTCTGCCGCCTCTATCGCCACCTCCTTT-GCCTCCGTTACCGGCTTCACCTTCCTC 255
||||||| |||||||| |||||||||| |||| |||||||| ||||||||||| |||||
Sbjct 134 CTCTCTCCGCCGCCTCCATCGCCACCT-CTTTCGCCTCCGTCACCGGCTTCACTTTCCTG 192
Query 256 TTGGGAACAGCAAGTGCATTGGAGACACTATGTGGCCAAGCTTACGGAGCAAA-ACTATA 314
|||| ||||| ||||| ||||||||||| ||||| ||| ||||||||||||| | | ||
Sbjct 193 ATGGGTACAGCGAGTGCGTTGGAGACACTTTGTGGGCAATCTTACGGAGCAAAGA-TGTA 251
Query 315 TGGAAAATTGGGAATTCAAATGCAGAGAGCAATGTTTGTACTTCTTATACTCTCTGTTCC 374
||| || | || ||| ||||||||||| |||||||| || || ||||| || ||||
Sbjct 252 TGGGAAGCTAGGCATTTTCATGCAGAGAGCTATGTTTGTTCTGCTCATACTTTCAATTCC 311
Query 375 TCTCTCAATCATTTGGGCTAACACAGAACAGATTCTCGTATTGGTCCATCAAGACAAGTC 434
|||||| || ||||| | |||| || | |||||||| || ||||| |||||||||||
Sbjct 312 TCTCTCGATGGTTTGGTTTTACACTGAGGACATTCTCGTCTTTGTCCACCAAGACAAGTC 371
Query 435 CATTGCAAGTGTTGCTGGCTCCTACGCTAAATACATGATCCCGAGCCTCTTCGCCTACG- 493
||| || || |||| ||||| ||||||| |||||||||||| ||| ||| ||||||||
Sbjct 372 CATAGCGAGACTTGCAGGCTCATACGCTAGATACATGATCCCTAGCATCTACGCCTACGC 431
Query 494 GACTGCTTCAATGTATCAACAGGTTCTTGCAAGCGCAGAACAATGTGTTCCCTGTCTTTG 553
| || |||||||| | ||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct 432 G-CTTCTTCAATGCCTAAACAGGTTCTTGCAAACGCAAAACAATGTGTTCCCTGTATTTG 490
Query 554 TCTGCTCTGGTATCACTACATGTCTTCA-TTTGCTTCTCTGTTGGTTGTTTGTGTTGAAG 612
| | |||||| |||||||| |||||||| || ||||| |||||| | || |||| ||||
Sbjct 491 TGTCCTCTGGAATCACTACTTGTCTTCACGTT-CTTCTTTGTTGGGTCTTCGTGTGGAAG 549
Query 613 ACTGGTTTAGGATACAGAGGAGCTGCTCTTGCTATTTCGGTCTCTTACTGGTTCAACGTC 672
||||||||||| |||| ||||||||||||||||| || |||||||| ||| |||| |||
Sbjct 550 TCTGGTTTAGGACACAGGGGAGCTGCTCTTGCTATCTCTGTCTCTTATTGGGTCAATGTC 609
Query 673 ATTCTCCTCTCGTGTTATGTCAAGTTTTC-GCCTTCTTGCTCGCATAGTTGGACCGGGTT 731
|||||||||||||||||||||||||| || || ||||||||| || | |||||| || ||
Sbjct 610 ATTCTCCTCTCGTGTTATGTCAAGTTCTCAGC-TTCTTGCTCACAAACTTGGACTGG-TT 667
Query 732 T-TCGAAAGAGGCTTTTCAAGA-ACTTTA-TGATTTCTCTAAAATT-GCTTTTCCTTCAG 787
| || |||||| ||||| | | || | || ||| | | || | | ||||||||| |
Sbjct 668 TCTCTAAAGAGTCTTTT-A-GCCACATCCCTGCTTT-TATGAAGCTCGGTTTTCCTTCTG 724
Query 788 CGGTCATGGTCTGTTTGGAGCTTTGGTCCTTCGAGCTTCTGGTTCT-T-GCCTCAGGCCT 845
|||| |||||||| || ||||| ||||| || |||||| ||||||| | | |||||| |
Sbjct 725 CGGTTATGGTCTGCTTAGAGCTCTGGTCGTTTGAGCTTTTGGTTCTCTTG--TCAGGC-T 781
Query 846 T-CTTCCTAACCCGGTTTTAGAAACTTCGG-TGCTTTCAATCTGTCTAAATACTTCCCTA 903
| ||||| || ||||||||||||||||| | ||||||||||| || ||||| || ||
Sbjct 782 TACTTCCCAATCCGGTTTTAGAAACTTCAACT-CTTTCAATCTGCCTTAATACATCATTA 840
Query 904 ACAATCTGGCA-GATTTCGGTTGGTCTTGGTGGCGCTGCAAGCATAAGGGTCTCAAACGA 962
|| ||||| | ||| ||||||| ||||||||| | ||||||| ||| |||| |||||
Sbjct 841 ACTGTCTGG-ATGATCCCGGTTGGCCTTGGTGGCACAGCAAGCACGAGGATCTCGAACGA 899
Query 963 GTTAGGAGCAGGGAATCCACAAGTG-GCAAAACTGGCTGTATATGTCATTGTAGGCATAG 1021
||||||||||||||||||| ||| | ||||| ||||||||| ||| |||||| || ||
Sbjct 900 GTTAGGAGCAGGGAATCCAAAAG-GCGCAAAGCTGGCTGTACGTGTGGTTGTAGCCACAG 958
Query 1022 CAGTAGCCGAGGGAATTGTGGTTGTAACAGTTTTGTTGTCGATTCGGAAGATCTTAGG-T 1080
||| | ||||| ||| || ||| | | ||||||||| |||||||||| | || || |
Sbjct 959 TAGTTGTAGAGGGTATTATGATTGGATCGGTTTTGTTGGCGATTCGGAATAAATTGGGAT 1018
Query 1081 CATGCTTTTAGCAGCGACCCGAAAA-TCATCGCATATGCCGCATCAATGATACCGATTGT 1139
||||||| |||||||| || |||| ||||| ||||| ||||| |||||||| |||||
Sbjct 1019 -ATGCTTTCAGCAGCGATCC-AAAAGTCATCAAATATGTAGCATCGATGATACCAATTGT 1076
Query 1140 TGCATGT-GGAAACTTCCTTGATGGCTTACAATGCGTACTCTCAGGGGTTGCTAGAGGAT 1198
|| || || |||||||| || || || |||||||| || |||||||||||||||||||
Sbjct 1077 CGC-TGCAGGCAACTTCCTCGACGGATTCCAATGCGTTCTGTCAGGGGTTGCTAGAGGAT 1135
Query 1199 GTGGATGGCAGAAAATTGGAGCATGTGTGAATCTTGGATCATATTATCTTGTTGGAGTTC 1258
||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct 1136 GTGGATGGCAGAAGATTGGAGCTTGTGTGAATCTCGGCTCATATTATCTAGTTGGAGTTC 1195
Query 1259 CATTAGGATTGTTACTTGGTTTCCATTTCCACATTGGTGGTCGGGGGCTTTGGCTGGGAA 1318
|| | || || ||||| ||||||||||| || ||||||||||||| |||||||| ||||
Sbjct 1196 CACTGGGGTTATTACTCGGTTTCCATTTACATTTTGGTGGTCGGGGCCTTTGGCTTGGAA 1255
Query 1319 TCGTAACAGCATT-GTCTGTTCAAGTGTTGTGTCTTTCCTT-AGTCACTAT-A-TTCACA 1374
||||| |||| || || |||||||||| ||| ||||||| | | |||| || | || |||
Sbjct 1256 TCGTATCAGCCTTAGT-TGTTCAAGTGCTGTCTCTTTCCATCA-TCAC-ATTAGTT-ACA 1311
Query 1375 AACTGGGATAAAGAGGCAAA 1394
||||||||||||||| ||||
Sbjct 1312 AACTGGGATAAAGAG-CAAA 1330
> Ahg949805 jgi|Araly1|949805|scaffold_801692.1
Length=1501
Score = 785 bits (425), Expect = 0.0
Identities = 1064/1367 (78%), Gaps = 66/1367 (5%)
Strand=Plus/Plus
Query 77 GTGTGAAGGAGGAGGTGAAGAAGCAGCTATGGCTTTCTGCTCCACTCATTGGTGTTAGCC 136
|||| |||||||| |||||||||||| |||||||||| | ||||||||| || ||||
Sbjct 85 GTGTCAAGGAGGAAGTGAAGAAGCAGATATGGCTTTCGGGTCCACTCATCACCGTGAGCC 144
Query 137 TTCTTCAATACTCTCTCCAAGTCATCTCCGTCATGTTCGTTGGCCATCTTGGCTCTCTTC 196
||||||| | | ||| ||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 145 TTCTTCAGTTTTGTCTACAAGTTATCTCCGTCATGTTCGTCGGTCATCTTGGCTCTCTTC 204
Query 197 CTCTCTCTGCCGCCTCTATCGCCACCTCCTTT-GCCTCCGTTACCGGCTTCACCTTCCTC 255
||||||| |||||||||||||||| || |||| ||||| || ||||| |||| |||||||
Sbjct 205 CTCTCTCCGCCGCCTCTATCGCCA-CTTCTTTCGCCTCAGTCACCGGTTTCAGCTTCCTC 263
Query 256 TTGGGAACAGCAAGTGCATTGGAGACACTATGTGGCCAAGCTTACGGAGCAAAACTA-TA 314
|||||||||||||||| || || ||||| |||||||||||||||||||| ||| | ||
Sbjct 264 ATGGGAACAGCAAGTGCCTTAGATACACTTTGTGGCCAAGCTTACGGAGC-AAAGAAGTA 322
Query 315 TGGAAAATTGGGAATTCAAATGCAGAGAGCAATGTTTGTACTTCTTATACT--C-TCTGT 371
|||| || ||||| |||||||| ||||||||||||| |||||| ||| | ||| |
Sbjct 323 CGGAATGTTAGGAATACAAATGCAAAGAGCAATGTTTG---TTCTTACACTAGCTTCTAT 379
Query 372 TCCTCTCTCAATCATTTGGGCTAACACAGAACAGATTCTCGTATT-GGTCCATCAAGACA 430
||||||||| ||||| |||||||||||||| || ||||||| || | | ||| |||
Sbjct 380 TCCTCTCTCCATCATATGGGCTAACACAGAGCATCTTCTCGTCTTCTTTGGA-CAAAACA 438
Query 431 AGTCCATTGCAAGTGTTGCTGGCTCCTACGCTAAATACATGATCCCGAGCCTCTTCGCCT 490
| |||||||| | | |||||||||||||| |||| ||||||||| ||| |||||||||
Sbjct 439 AATCCATTGCTACACTCGCTGGCTCCTACGCAAAATTCATGATCCCAAGCATCTTCGCCT 498
Query 491 ACGGACTGCTTCAATG-TATCAACAGGTTCTTGCAAGCGCAGAACAATGTGTTCCCTGT- 548
|||| || |||||||| | | |||||||| ||||| || || ||||||||||| |||||
Sbjct 499 ACGGTCTCCTTCAATGCT-TTAACAGGTTTTTGCAGGCCCAAAACAATGTGTTTCCTGTG 557
Query 549 CTTTGTCTGCTCTGGTA-TCACTACATGTCTTCATTTGCTTCTCTGTTGGTTGTTTGTGT 607
||| |||||||||| | |||| || | ||||||| | || || |||||| | || || |
Sbjct 558 GTTT-TCTGCTCTGG-AGTCACCACTTCTCTTCATGTCCTCCTTTGTTGGATCTTGGTTT 615
Query 608 TGAAGA-CTGGTTTA-GGATACAGAGGAGCTGCTCTTGCTATTTCGGTCTCTTACTGG-T 664
| || | |||||||| || | || ||||||||||||||| | || | || || ||| |
Sbjct 616 TTAA-ATCTGGTTTAGGGTTTCA-AGGAGCTGCTCTTGCCAACTCCATTTCGTATTGGCT 673
Query 665 TCAACGTCATTCTCCT-CTCGTGTTATGTCAAGTTTTCGCCTTCTTGCTCGCAT-AGTTG 722
| || ||||||||| | || ||||| || |||||||||||||||||||| | | | |||
Sbjct 674 T-AATGTCATTCTCTTGTTC-TGTTACGTTAAGTTTTCGCCTTCTTGCTCAC-TGACTTG 730
Query 723 GACCGGGTTT-TCGAAAGAGGCTTTTCAAGAACT-TTAT-GATTTCTCT-AAAATTGCTT 778
|||| ||||| || || |||||| | | | | | | | ||| ||| | | | |||
Sbjct 731 GACC-GGTTTCTCTAAGGAGGCTCTACGCG-A-TATCCTCCCTTT-TCTGAGACTAGCTG 786
Query 779 TTCCTTCAGCGGTCATGGTCTGTTTGGAGCTTTGGTCCTTCGAGCTTCTGGTTCT-TGCC 837
||||||| || | |||||||| || ||| | |||||||| || || | ||||| |
Sbjct 787 TTCCTTCTGCACTTATGGTCTGCTTAGAGATGTGGTCCTTTGAATTTTTAGTTCTCT-TA 845
Query 838 TCAGGCCTTCTTCCTAACCCGGTTTTAGAAACTTCGGTGCTTTCAATCTGTCTAAATACT 897
||||| |||||||| ||||||||| |||||||||| || || || ||||| || |||||
Sbjct 846 TCAGGACTTCTTCCAAACCCGGTTCTAGAAACTTCTGTTCTCTCTATCTGCCTTAATACA 905
Query 898 TCCCTAACAATCTGGCA-GATTTCGGTTGGTCTTGGTGGCGCTGCAAGCATAAGGGTCTC 956
| |||||| ||| | ||| | ||||||| ||||||||||||||| ||| ||||
Sbjct 906 GCAGGAACAATGTGG-ATGATCCCATTTGGTCTCAGTGGCGCTGCAAGCACGAGGATCTC 964
Query 957 AAACGAGTTAGGAGCAGGG-AATCC-ACAAGTGGCAAAACTGGCTGTATATGTCATTGTA 1014
|| ||||||||||| ||| ||||| | ||||||| || || || || ||| | ||
Sbjct 965 GAATGAGTTAGGAGC-GGGTAATCCGA-AAGTGGCTAAGCTTGCGGTGCGTGTGGTCATA 1022
Query 1015 GGCATAGCAGTAGCCGAGGGAATTGTGGTTGTAACAGTTTTGTTGTCGATTCGGAAGATC 1074
|||| ||||| || || | || ||| | | | || ||||| | | ||| |||| ||
Sbjct 1023 TGCATTGCAGTCGCAGAAAGTATAGTGATCGGATCAATTTTGATATTGATAAGGAATAT- 1081
Query 1075 TTAGGTCA-T-GCTTTTAGCAGCGACCCGAAAATCA-TCGCATATGCCGCATCAATGATA 1131
| || | | |||| ||| || || ||| || | | || | || | || || |||||
Sbjct 1082 AT-GGGGATTGGCTTATAGTAGTGAACCGGAAGT-AGTCACTTACGTAGCCTCCATGATG 1139
Query 1132 CCGATTGTTGCATGT-GGAAACTTCCTTGA-TGGCTTACAATGCGTACTCTCAGGGGTTG 1189
|||||| | || | | || || || || || | ||| |||||||| |||||||||||||
Sbjct 1140 CCGATTCTCGCCT-TAGGCAATTTTCTAGACAGTCTT-CAATGCGTTCTCTCAGGGGTTG 1197
Query 1190 CTAGAGGATGTGGATGGCAGAAAATTGGAGCA-TG-TGTGAATCTTGGATCATATTATCT 1247
|||||||||||||||||||||| || |||||| | | | || ||||| |||||||||||
Sbjct 1198 CTAGAGGATGTGGATGGCAGAAGATAGGAGCAATCAT-T-AACCTTGGTTCATATTATCT 1255
Query 1248 TGTTGGAGTTCCATT-AGGATTGTTACTTGGTTTCCA-TTTCCACATTGGTGGTCGGGGG 1305
|||||||||||| || ||| |||||||||| |||||| |||| || ||||||||||||||
Sbjct 1256 TGTTGGAGTTCC-TTCAGGCTTGTTACTTGCTTTCCACTTTC-ACGTTGGTGGTCGGGGG 1313
Query 1306 CTTTGGCTGGGAATCGTAACAGCATT-GTCTGTTCAAGTGTTGTG-TCTTTCCTTAGTCA 1363
|||||||| |||||| || || | || ||||||||| || || |||| || | ||||
Sbjct 1314 CTTTGGCTTGGAATCATATGTGCCCTCGT-TGTTCAAGTTTT-TGGTCTTGCCCTCGTCA 1371
Query 1364 CTATATTCACAAACTGGGATAAAGAGGCAAAGAAAGCTACGAACAGA 1410
| || || ||||| |||||| ||||||| ||||||||||| || |||
Sbjct 1372 CCATTTTTACAAATTGGGATGAAGAGGCCAAGAAAGCTACAAATAGA 1418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5