BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73740.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316317 jgi|Araly1|316317|fgenesh1_pm.C_scaffold_2001350 2002 0.0
> Ahg316317 jgi|Araly1|316317|fgenesh1_pm.C_scaffold_2001350
Length=1308
Score = 2002 bits (1084), Expect = 0.0
Identities = 1236/1309 (94%), Gaps = 12/1309 (1%)
Strand=Plus/Plus
Query 173 ATGGCGATCCCTTCCTTCCTCTCTCCAAATTTACACTTTTACCCTTCTACCAAACTCGTT 232
|||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| ||
Sbjct 1 ATGGCGATCCCTTCCTTCCTCTCTCCAAATTTACCCTTTTGCCCTTCGACCAAACTTATT 60
Query 233 CCGAGTCGACTCACTCTTTCCTCATCCTCCT--T-CGTTTGTTGTTTATCAGTAGACCGC 289
|||||||||||||| |||||||| ||||||| | | |||||||| | ||||||||||||
Sbjct 61 CCGAGTCGACTCACCCTTTCCTCCTCCTCCTCCTCCATTTGTTGTATCTCAGTAGACCGC 120
Query 290 CAAATTAACCATTCCTCCGTCTCCAACGAAACCTCCGGCTTACGAGTTGTCATATCCGCC 349
|||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||
Sbjct 121 CAAATTAACCATTCCTCCGTCTCCGACGAAATCTCCGGCTTACGAGTAGTCATATCCGCC 180
Query 350 GGAGGCACCGCCGGACACATCTCTTCAGC-CTTAGCGATCGGAGACGAGCTAAAATCAGC 408
|| ||||||||||||||||||||||| || | ||||||||||||||||||| ||||||||
Sbjct 181 GGGGGCACCGCCGGACACATCTCTTCGGCGC-TAGCGATCGGAGACGAGCTGAAATCAGC 239
Query 409 CGACCCACTTGCTCGAATCCTCTTCATCGGATTCCCAAACAGTATGGAGAGCACGACGGT 468
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGACCCACTTGCTCGGATCCTCTTCATCGGATTCCCAAACAGTATGGAGAGCACGACGGT 299
Query 469 TCCATCCGCCGGATTCGATTTCTCAACAATCTCCACCGTCGGATCATCATCGTCCCGACC 528
||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 TCCCTCCGCCGGTTTCGAGTTCTCAGCAATCTCCACCGTCGGATCATCATCGTCCCGACC 359
Query 529 ATTCCTCTGTTTCACCTCTTTCCTCAAATTCCCTCTCCGCTTGATCCAATCCACCTTCGA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTCCTCTGTTTCACCTCTTTCCTCAAATTCCCTCTCCGCTTGATCCAATCCACCTTCGA 419
Query 589 ATCCTACAAAATCCTCCGCGAACTAAAACCACAAATCGTCATCGGCACCGGAGGACACGC 648
|||||||||||||||||| ||| | ||||| ||||||||| |||| ||||||||||||||
Sbjct 420 ATCCTACAAAATCCTCCGTGAATTCAAACCTCAAATCGTCGTCGGAACCGGAGGACACGC 479
Query 649 CTCTTTTCCGGTCTGTTTCGCCGCCGTGATCTCAAGAACTAAATTCGTAATCCAAGAACA 708
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CTCTTTCCCGGTATGTTTCGCCGCCGTGATCTCAAGAACCAAATTCGTAATCCAAGAACA 539
Query 709 AGATTCAATCCCTGGAACCACTAACTGGATTCTGTCTTTCTTCGCCGATACAATCTTCGC 768
||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 540 AGATTCAATCCCTGGAACCACCAATTGGATTCTCTCTTTCTTCGCCGACACAATCTTCGC 599
Query 769 TCCTTTCAACTGTACAGTCACTAACCTCCCCAAACGAGTCGCCGCG-AAGTGTGTCGTCT 827
||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 600 TCCTTTCAATTGTACAGTCACTAACCTCCCCAAACGAGTCGCCG-GAAAGTGTGTCGTCT 658
Query 828 ACGGGAACCCGATAAGACAAACGCTTAGACGATACTCGTCGAAAGGAGCGGCGCGTGTGA 887
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 659 ACGGGAACCCGATAAGACAAGCGCTTAGACGGTACTCGTCGAAAGGAGCGGCGCGTGTGA 718
Query 888 GCTTCTTCGGACAGTGGGCTGGAGCTGTGTCGGAACCGAAAGTTGTGCTTTTGCTTGGTG 947
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 719 GCTTCTTCGGACAGTGGGCTGGGGCTGTGTCGGAAGCGAAAGTTGTGCTTTTGCTTGGTG 778
Query 948 GGTCTTTAGGAGCCAATGCCATTAACATAGCTTTGCTTAACTGTTACTCGCAGTTGTTGT 1007
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGTCATTAGGAGCCAATGCCATTAACATAGCTTTGCTTAACTGTTACTCGCAGTTGTTGT 838
Query 1008 CTGAACATGAGAACTGGTTCTTTGTTTGGCAAACTGGTGTTGAAGCTTTTGATGAAATGG 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTGAACATGAGAACTGGTTCTTTGTTTGGCAAACTGGTGTTGAAGCTTTTGATGAAATGG 898
Query 1068 ATAGTCTTGTTAGAAGTCATCCTCGTCTCTTTCTATCTCCGTTTTTGAGGTCGATAGGTG 1127
|||||||||||||||| ||||||||||||||||||||||| || ||| | || || ||||
Sbjct 899 ATAGTCTTGTTAGAAGCCATCCTCGTCTCTTTCTATCTCCATTCTTGCGATCAATCGGTG 958
Query 1128 TGGCGTATGCGGCTGCAGATTTGGTTATCTCGAGAGCTGGTGCAATGACTTGCTCAGAGA 1187
|||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 959 TGGCTTACGCGGCTGCAGATTTGGTTATATCGAGAGCGGGTGCAATGACTTGCTCAGAGA 1018
Query 1188 TTATGGCTTTAGGCAAACCTTCTATTCTGATACCATCACCGCATAGCGATGAAGGGGATC 1247
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 TTATGGCTTTAGGCAAACCTTCTATTCTGATACCATCACCACATAGCGATGAAGGGGATC 1078
Query 1248 AAGTAAGGAATGCTTCTTTAATGGCGGACATTGTTGGATCAAAGTTAATAACAGAAGAGG 1307
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 AAGTAAGGAATGCTTGTTTAATGGCAGACATTGTTGGATCAAAGTTAATAACAGAAGAGG 1138
Query 1308 AGCTAGATACGATCACTCTTAGAGCTGCCATGGAAGATATTCTAGGGAATGAAGAACTGA 1367
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGCTAGATACGATAACTCTTCGAGCTGCCATGGAAGATATTCTAGGGAATGAAGAACTGA 1198
Query 1368 TGATGGAAATGAGCGAGCGGGCATTCAAAGCTGCGAAAGCGGACGCTGCATCAGATGTTG 1427
|| |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 1199 TGGCGGAAATGAGCGAGCGGGCGTTCAAAGCTGCGAAACCTGACGCTGCATCAGATGTTG 1258
Query 1428 CTAAACACATTATTTCTATTATCAAATC-----CAAAGATAAGTAGGTA 1471
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1259 CTAAACACATTATTTCTATTATCAAATCAAATACAAAGATAAGTAGGTA 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5