BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73750.1
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476515 jgi|Araly1|476515|fgenesh2_kg.2__1645__AT1G73750.1 2412 0.0
> Ahg476515 jgi|Araly1|476515|fgenesh2_kg.2__1645__AT1G73750.1
Length=1585
Score = 2412 bits (1306), Expect = 0.0
Identities = 1495/1587 (94%), Gaps = 9/1587 (1%)
Strand=Plus/Plus
Query 1 CGGGATACCGCTAGTGATTAACGGTGGTTATGGATACCCTCCGATTCGAGTTAAGCTCAG 60
||||||| | |||||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct 1 CGGGATATTGGTAGTGATTCACGGTGGTTATGGACACTCTCCGATTCGAGTTAAGCTCGG 60
Query 61 CTTCCTTCACTTCCGCCGTCACCGCCTCTTCTTTACACAGTCACTCACGGTATTTCTTCT 120
| |||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 61 CCTCCTTCACTTCCGCTGTCGCCGCCTCTTCTTTACACAATCACTCACGGCATTTCTTCT 120
Query 121 CCTCAGTGCAACTCGGCCGAGTCGGCTCATCATCTCCGGCGATCACATCGGTCTCGAGGA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CCTCACTGCAACTCGGCCGAGTCGGCTCATCATCTCCGGCGATCACATCGGTCGCGAGGA 180
Query 181 CGACAGTGAATGAAATCTGCACGGCGGATGAACTTCACTACGTTCCTGTTCCCAACTCCG 240
|||| | ||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 181 CGACGGAGAATGAAATCTGCACGGCGGACGAACTTCACTACGTTCCTGTTCCAAATTCCG 240
Query 241 ATTGGCGCGTCGCTCTCTGGCGATATCTTCCTTCCCCAAAGGCACCGAAGAGGAACCATC 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 ATTGGCGCGTCGCTCTCTGGCGATATCTTCCTTCCCCAAAGGCACCAAAGAGGAACCATC 300
Query 301 CTTTGCTTCTATTGTCTGGGATTGGGACCAATGCTGTTACATACGATCTTTCCCCTGAGT 360
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTTGCTTCTACTGTCTGGAATTGGGACCAATGCTGTTACATACGATCTTTCCCCTGAGT 360
Query 361 GTTCCTTTGCAAGATCCATGTCTGGATCAGGATTTGATACATGGATTCTTGAGCTCCGTG 420
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 361 GTTCTTTTGCAAGATTCATGTCTGGATCAGGATTTGATACGTGGATTCTTGAGCTTCGTG 420
Query 421 GAGCCGGGCTGAGTTCTCTCAGTGTTGATACAAATCTTGGTAAAGGCAATAACCAGCAGC 480
|||||||| |||||||| | ||||| ||||||||||||||||||||||||| ||||||||
Sbjct 421 GAGCCGGGTTGAGTTCTTTAAGTGTCGATACAAATCTTGGTAAAGGCAATAGCCAGCAGC 480
Query 481 GGATAGTCTCGAATCTATTGGAGAATTTCATAAGTGTATCTGAAAGGCTGGAAAATGTTC 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGTAGTCTCGAATCTATTGGAGAATTTCATAAGTGTATCTGAAAGGCTGGAAAATGTTC 540
Query 541 TTGATGGAGGTTCCAAGATCCTTGGGATGCAAGACCGTCTATCGAAGAGAGCGGGAGATT 600
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 541 TTGATGGAGGTTCCAAGATCCTAGGGATGCAAGACCGTCTATCGAAGAGAGCAGGAGATT 600
Query 601 TCAAGCAGCGGTTTGAACTTATCCCTCATTACAATTGGGATTTTGATAACTATCTAGAAG 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAAGCAGCGGCTTGAACTTATCCCTCATTACAATTGGGATTTTGATAACTATCTAGAAG 660
Query 661 AAGATGTTCCTTCTGCGATGGACTATGTAAGGACTCAAACCAAGTCAAAAGATGGAAAGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGATGTTCCTTCTGCGATGGACTATGTAAGGACTCAAACCAAGTCAAAAGATGGAAAGT 720
Query 721 TGCTAGCAGTTGGTCACTCAATGGGTGGTATCTTGTTATATGCCTTGCTCTCAAGATGTG 780
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 TGCTCGCAGTTGGTCACTCAATGGGTGGCATCTTGTTATATGCCTTGCTCTCAAGATGTG 780
Query 781 GCTTTAAAGGAATGGATTCAGGTTTGGCTGGTGTCACCACTCTCGCATCAACATTTGACT 840
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 781 GCTTTAAAGGAATGGATTCAGGTTTGGCTGCTGTCACCACTCTTGCATCAACATTTGACT 840
Query 841 ATTCATCCTCAGGAACACTCCTCAAGTACCTATTACCAATGAAAGAGCCTGCACAAGCTA 900
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 841 ATTCATCCTCAGGAACACTCCTCAAGTACCTATTACCCATGAAAGAGCCAGCACAAGCTA 900
Query 901 TTAACCTTCCTATCATGCCAATTGACACAATGCTCGCTATGGCTCACCCTCTAATGTGTC 960
||||||| ||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct 901 TTAACCTGCCTATCATGCCGATTGACACAATGCTCGCTATGGTTCACCCTCTCATGTGTC 960
Query 961 GTCCTCCATATTCTTTGTCCTGGTTAACCGCTAATATCTCTGCTCCTCAAATGATGGACC 1020
||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 961 GTCCTCCATATGCTTTGTCTTGGTTAACTGCTAATATCTCTGCCCCTCAAATGATGGACC 1020
Query 1021 CTGAAGTTATTGAGAAGCTTGTTTTGAACAGCTTATGCACAGTACCAGTCAAGCTTCTCT 1080
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1021 CTGAAGTGATTGAGAAGCTTGTTTTGAACAGCTTAAGCACAGTACCAGTTAAGCTTCTCT 1080
Query 1081 TGCAGCTAACAACAGCCGTGGACCACGGTGGGTTGCGTGACAGAACCGGTACTTTCTGTT 1140
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1081 TGCAGCTAACAACAGCCGTGGACCACGGTGGGCTGCGTGATAGAACGGGTACTTTCTGTT 1140
Query 1141 ACAAGGATCATATCAGCAAAACAAATGTGCCTATCTTAGCTCTTGCAGGGGACTGGGACA 1200
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACAAGGATCATATCAGCAAAACCAATGTGCCTATCTTAGCTCTTGCAGGGGACTGGGACA 1200
Query 1201 TAATCTGCCCTCCCGATGCAGTATACGATACTGTAAAGCTGATTCCAGAACATCTAGCCA 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1201 TAATCTGCCCTCCCGATGCAGTATACGATACTGTAAAGCTGATTCCAGAACAACTAGCTA 1260
Query 1261 CTTACAAAGTTGTAGGATCACCCGGAGGTCCACATTATGGCCACCAGGATCTAATTTCGG 1320
||| || |||| |||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1261 CTTTCAGAGTTTTAGGGTCACCCGGAGGTCCACATTATGGCCACCAGGATCTAATCTCTG 1320
Query 1321 GTCGAACGGCTCGGAACGAAGTATATCCTCTGATTACTAGATTTCTTCAACAACAAGATG 1380
||||| |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 1321 GTCGATCGGCTCCGAACGAAGTATATCCTCTGATTACTCGATTTCTTCAACTACATGATG 1380
Query 1381 AGAGTTAAGATCAACAAGAATGCAAATGAATTTTGATTCTTGTTTCTGTACATATAACAT 1440
||| ||||||||||| ||| | |||||| |||||| |||||||||||||||||| |||||
Sbjct 1381 AGATTTAAGATCAACGAGAGTTCAAATGGATTTTGGTTCTTGTTTCTGTACATAAAACAT 1440
Query 1441 TCCATATATACAT-TTAT--GTGTACAAATCTTCATACAGTTAAACTCACAAGCACTGTA 1497
|||||| |||| | |||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 1441 TCCATACATAC-TCTTATAAGTATACAAATCTTCACACAGTTAAACTCACAAGCACTGTA 1499
Query 1498 -TACAAATTAAA-TACAAATGATACCTTT-AA-TTGATCTCGTGTATGTGTAGATTACAC 1553
|| |||||||| | |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1500 GTAGAAATTAAACT-CAAATGATACCTTTCAAATTGATCTCGTGTATGTGTAGATTACAC 1558
Query 1554 TAAAGATAAACGATGTTACTTGCACGT 1580
|| |||| ||||||||||||||||||
Sbjct 1559 TACAGATTCACGATGTTACTTGCACGT 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59192240730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5