BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73760.1
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476516 jgi|Araly1|476516|fgenesh2_kg.2__1646__AT1G73760.1 1964 0.0
> Ahg476516 jgi|Araly1|476516|fgenesh2_kg.2__1646__AT1G73760.1
Length=1325
Score = 1964 bits (1063), Expect = 0.0
Identities = 1254/1343 (93%), Gaps = 26/1343 (2%)
Strand=Plus/Plus
Query 14 ttttttctctctctcACAGAGAAAAAGAACACAATGCCAGTTTCTGCAGAGCCTTCTTCA 73
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 TTTTTTCTCTCTCTCACAGAGAAGAAGAAGACAATGCCAGTTTCTGCAGAGCCTTCTTCA 60
Query 74 TCTTCTTCAACAACAATCGGTCAACACATGAGACTCCAACGACCTAGGAATCATCGAAAT 133
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCTTCTTCAACAACAATCGGTCAACACATCAGACTCCAACGACCTAGGAATCATCGAAAT 120
Query 134 CTCCCACCCATTTCCACCGCCGACGAACCTCTAATCCCCAAACCTAGCCGCGTCTCTAAA 193
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CTCCCACCCATTTCCACCGCCGACGAACCTCTACTCCCCAAACCTAGCCGCGTCTCTAAA 180
Query 194 TCCGCCATGTCTTCCTTCTTCCTCTTGCCAGAAACTACTAAGAAGAAACCCAACGGAACG 253
||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||
Sbjct 181 TCCGCCATGTCTTCCTTCTTCCTCTTGCCAGAAACCACAAAGAAGAAACCC--C-AAACG 237
Query 254 GCGTCGTTTCGTGGTC-TAGGCTGCACAACCTCCGCATCTCAGCAAGTTTCAGTCCCGGC 312
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GCGTCGTTTCGTGG-CTTGGGCTGCACAACCTCCGCATCTCAGCAAGTTTCAGTCCCGGC 296
Query 313 AGTGATTCGCTCCTCCGCGGATTGGGATGCTAGTAATTTCAAAATTAAGAAGACGAAGAA 372
|||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 297 GGTGATTCGCTTCTCCGCGGATTGGGATGCGAGCAATTTCAAAATCAAGAAGACGAAGAA 356
Query 373 GAAGAACAAGAACAAGGGTAGTAGTAGCTACAATGGTGGTTCGATTAAGATCTTGAGCGA 432
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 357 GAAGAACAAGAACAAAGGTAGTAGCAGCTACAATGGTGGCTCGATTAAGATCTTGAGCGA 416
Query 433 AGCTAGTACTAGTAGTAGCGTCGCTTGCGCAGCGATTCCTGATGTTTGGTGTGGTCCTGG 492
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 AGCTAG---TAGTAGTAGCGTCGCTTGCGCAGCGATTCCTGATGTTTGGTGTGGACCTGG 473
Query 493 AGTTGGGTTTTCAACGGATGCTGTCGTCGGAGGCTCCATTGACACAGTTGTTTCAGATCC 552
|||||||| |||||||||||||||||| || | ||||| || | ||||||||
Sbjct 474 TGTTGGGTTCTCAACGGATGCTGTCGTC---GG---C---GACACCGTCGAGTCAGATCC 524
Query 553 TCCGAGAAGGAATATTCCGGTGAGACGCAAAATCGATGGAGATAAAACCAATAGTAACAG 612
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 525 TCCGAGAAGGAATATTCCGGTGAGACGCAAAATCGATGGAGAAAAAACCAATAGTAGCAG 584
Query 613 TAATAATCATAGAGAGGGTTCTTCTTCTCTTCTTCCTAGACGATCTCTCAATCAAGAGTC 672
||||||||| |||||| || ||||||||||||||| |||||||||||||||||||| ||
Sbjct 585 TAATAATCAGAGAGAGTTTTGTTCTTCTCTTCTTCCCAGACGATCTCTCAATCAAGAATC 644
Query 673 TAATCCTTATTTTGATTCTGATTCGAG-TTTTTTGACATCGCGGGCTGAGCAGACTGATA 731
||||||||| ||||||||||||||| | |||||||||||||||| |||| ||||||||||
Sbjct 645 TAATCCTTACTTTGATTCTGATTCG-GCTTTTTTGACATCGCGGTCTGAACAGACTGATA 703
Query 732 GATATCATCGTCATCTAAGACTGCCTTACCCTGATGGACTCGCTGAGATGATGATGATGC 791
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 704 GATATCATCGTCATCTAAGACAGTCTTACCCTGATGGACTCGCTGAGATGATGATGATGC 763
Query 792 AGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTCGATCAATTCCGTGACATGAGGC 851
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 764 AGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTCGATCAATTCCATGACATGAGGC 823
Query 852 TCAATGTCGATAACATGACATACGAGCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATG 911
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 824 TCAATGTTGATAACATGACATACGAGCAACTTTTGGAGCTTGGTGAAAGAATTGGTCATG 883
Query 912 TGAACACTGGACTTACTGAAAAACAGATCAAAAGTTGTCTTCGGAAAGTCAAACCATGCC 971
||||||||||||| | |||||||||||||||||| ||||| |||||||| ||||||| ||
Sbjct 884 TGAACACTGGACTAAATGAAAAACAGATCAAAAGCTGTCTCCGGAAAGTTAAACCATTCC 943
Query 972 GGCAAGATACAACAGTTGCTGATAGAAAGTGCATCATCTGTCAAGACGAGTATGAGGCGA 1031
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 944 ATTTAGATACACCAGTTGCAGATAGAAAGTGCATCATCTGTCAAGACGAGTATGAGGCAA 1003
Query 1032 AGGACGAGGTAGGGGAATTAC-GATGTGGGCACAGGTTCCATATCGACTGTGTGAATCAA 1090
|||||||||||||| |||||| | ||||||||||||||||||||| |||||||||| |||
Sbjct 1004 AGGACGAGGTAGGGAAATTACCG-TGTGGGCACAGGTTCCATATCCACTGTGTGAAACAA 1062
Query 1091 TGGCTTGTGAGGAAGAACTCTTGTCCGGTCTGTAAAACGATGGCGTACAATAAGTCTTAG 1150
||||| |||||||||||||||||||| ||||||||||||||| || || |||||||||||
Sbjct 1063 TGGCTAGTGAGGAAGAACTCTTGTCCCGTCTGTAAAACGATGCCGCACGATAAGTCTTAG 1122
Query 1151 -T-TAGATATTATCTCTTCCTGTGATGTGATTCTTGATTTCGGGATTGAAACCAAATCAC 1208
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 ATATAGATATTATCTCTTCCTGTGATGTGATTCTTGATTTCGGGATTGAAACCAAATCAC 1182
Query 1209 TATTTTATGTTAAGATTCTTTTTT-GGCTTTTTATTCATGATTGCTATTTTTCTGAGGAA 1267
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1183 TATTTTATGTTAAGATTCTTTTTTTGGCTTTTTATTTATGATTGCTATTTTTCTGAGAAA 1242
Query 1268 AAA-CTGTTGAGACCTTTGTATTACCTATGGAAAAGTCTCGGAGACATTGTGAACCCCAC 1326
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1243 AAAACTGTTGAGACCTTTGTATTACCTATGGAAAAGTCTGGGAGACATTGTGAACCCCAC 1302
Query 1327 A-TTGCGTGTGGGTTTGTTCATC 1348
| |||||||||||||||||||||
Sbjct 1303 AATTGCGTGTGGGTTTGTTCATC 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5