BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73770.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg908997 jgi|Araly1|908997|Al_scaffold_0002_2078 717 0.0
> Ahg908997 jgi|Araly1|908997|Al_scaffold_0002_2078
Length=579
Score = 717 bits (388), Expect = 0.0
Identities = 521/584 (89%), Gaps = 13/584 (2%)
Strand=Plus/Plus
Query 88 ATGAGACGATTTCTGCAGAGAGTTCCCAGTTTACTGGCTCGAAATATCCTTCACTCACCC 147
|||||||||||||| || |||||||||| ||| ||||||||||| |||||||||| |||
Sbjct 1 ATGAGACGATTTCTTCAAAGAGTTCCCACTTTGTTGGCTCGAAATTTCCTTCACTCGCCC 60
Query 148 GCAAATTTCCGCCATTTGAGAATCAACAACCCTC--G-TGTTGTTGTTCCTCTCTTCGAA 204
|| |||||||| || || ||| || |||||||| | ||||||||||||||||||||||
Sbjct 61 GCCAATTTCCGTCA-TT-CGAA-CATCAACCCTCGTGTTGTTGTTGTTCCTCTCTTCGAA 117
Query 205 CGAGCTATTTCCCGGTTCGTCTTCTTCTCTTCCGAGTCCGACTCGTCGCGTGGTTTCAGA 264
|||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct 118 CGAGCTATTTCCCGATTCGTCTTCTTCTCTTCCGAGTCCGATTCGGCGCGTGGTTTCAAA 177
Query 265 A-CTGAAGAGGTTCTTTCTAAAGAAGAGCTGaaaaaaaGAATTCAAAGCTTTTTGGATGA 323
| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 178 AAC-GACGAGGTTCTTTCTAAAGAAGAGCTGAAAAAGAGAATTCAAAGCTTTTTGGATGA 236
Query 324 TGGAAATGAGGATGCTATACCTGATTTATTTGAGGCATTGATGATTAGGAAGTTATCAGG 383
|||| |||||||| | |||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 237 TGGAGATGAGGATTCAATACCTGACTTGTTTGAGGCAATGATGATTAGGAAGTTATCAGG 296
Query 384 GAAGCACGATGATAGTGATGATGAAGTGATGGATGTGGTGCGTAAGTATCCAGTTAACGA 443
||||||||||||||| || ||||| |||||||||| ||||||||||||||||||||||||
Sbjct 297 GAAGCACGATGATAGCGACGATGAGGTGATGGATGAGGTGCGTAAGTATCCAGTTAACGA 356
Query 444 TGCACATAAGGTTGACGATATTGACTCTGATATTGAGAGTGATGGCCATGGTGATTCGTC 503
||||||||| || || || | ||||||||||| ||| ||||||||||||||||||||||
Sbjct 357 TGCACATAATGTCGATGAAACAGACTCTGATATCGAGGGTGATGGCCATGGTGATTCGTC 416
Query 504 TGATTCAGATATTGAGAGTGATGACTTGAGAGATGGTGATTCGTCTGATTCCGATGTAGA 563
|||||||||||| |||| ||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 417 TGATTCAGATATAGAGACTGATGGCCTGAGAGATGGTGATTCGTCTGATTCCGATATAGA 476
Query 564 GTTTGATGGTTTCA-ATGATGTTGGCTTGTCTGATGTCAATATTAAGACTGATGCC---C 619
||||||||| | | | |||||||||||||||||||||||||| |||| ||||| |
Sbjct 477 GTTTGATGGCCTGAGA-GATGTTGGCTTGTCTGATGTCAATATCAAGATTGATGATGGTC 535
Query 620 TGAAAGCTAATCGCTCGTCTTATTCTTACTCTGAAAGTGATTAA 663
| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct 536 TTAAAGCTAATCGCTTGTCTTATTCTGACTCTGAAAGTGATTAA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5