BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73780.1
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476517 jgi|Araly1|476517|fgenesh2_kg.2__1647__AT1G73780.1 388 9e-108
> Ahg476517 jgi|Araly1|476517|fgenesh2_kg.2__1647__AT1G73780.1
Length=297
Score = 388 bits (210), Expect = 9e-108
Identities = 270/299 (90%), Gaps = 4/299 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGGTTCTTGCACAAAACCAGTGTTTTTCACTTGTACAATCCTTCTCATTTTAATT 60
|||||||||||||| ||||||||||||| ||||||||| ||||| |||| ||| | |||
Sbjct 1 ATGAAGGGTTCTTGTGCAAAACCAGTGTTGTTCACTTGTGCAATCTTTCTTATTCTCATT 60
Query 61 GTTGCCCAAGAAAACAGAGTCGCTGCAGTAGATCCATGTAATCCTGCGCAGCTGAGTCCA 120
||||| |||||||| |||||||||||| |||| |||||| ||||| | || |||| |||
Sbjct 61 GTTGCTCAAGAAAATAGAGTCGCTGCATTAGAGCCATGTGATCCTATGAAGTTGAGCCCA 120
Query 121 TGCTTGGAGACCATAATGAAAGGGTCTGAGCCATCGGATCTGTGTTGCAGC-AAGGTGAA 179
|||||||| ||||||| ||||||||||||||||||||| |||||||||| | ||||||||
Sbjct 121 TGCTTGGACACCATAACGAAAGGGTCTGAGCCATCGGAACTGTGTTGCA-CAAAGGTGAA 179
Query 180 GGAGCAACAGCATTGTATCTGCCAGTACTTGAAGAACCCTAACTTCAAATCTTTCCTTAA 239
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGAGCAACAGCACTGTGTCTGCCAGTACTTGAAGAACCCTAACTTCAAATCTTTCCTTAA 239
Query 240 CTCCCCAAACGCCAAAATA-ATCGCCACTGATTGTCATTGTCCGTATCCGAAATGCTAG 297
||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 240 CTCACCAAACGCCAAAA-AGATCGCCACTGATTGTCATTGTCCGTATCCCAAATGCTAG 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10416475797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5