BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73790.1

Length=507
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926756 jgi|Araly1|926756|scaffold_202317.1                        309    1e-83


> Ahg926756 jgi|Araly1|926756|scaffold_202317.1
Length=247

 Score =  309 bits (167),  Expect = 1e-83
 Identities = 195/208 (94%), Gaps = 3/208 (1%)
 Strand=Plus/Plus

Query  148  TATGAATCAGGAAGCAGCTGAAACAGCGAGAGAGTCACTGGAGCTGGTGTTTCGGATGTC  207
            |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  20   TATGAATCAGGAAGCAGCTGAAACAGCGAGAGAGTCGCTGGAGCTAGTGTTTCGGATGTC  79

Query  208  GAACATCTTGGAGACAGGTCTTGATCGACATACTTTGTCTGTTCTTATAGCTCTTTGCGA  267
             ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct  80   CAACATCTTGGAGACAGGGCTTGATCGACATACTTTGTCTGTTCTCATAGCTCTTTGCGA  139

Query  268  TATTGGTCTTAACCCTGAGGCTCTCGCTACTCTCGTCAAGGAGCTTCGTAGGGATTCTGC  327
             ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct  140  CATTGGTCTTAACCCTGAGGCTCTTGCTACTCTCGTCAAGGAGCTTCGCAGAGATTCTGC  199

Query  328  TACAACAACAAC---TACGGTTGATTAA  352
            ||||||||||||   |||||| ||||||
Sbjct  200  TACAACAACAACAACTACGGTAGATTAA  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18429149487


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5