BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73805.1
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926757 jgi|Araly1|926757|scaffold_202318.1 2061 0.0
> Ahg926757 jgi|Araly1|926757|scaffold_202318.1
Length=1391
Score = 2061 bits (1116), Expect = 0.0
Identities = 1302/1388 (94%), Gaps = 28/1388 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGGGAAGAGGTTATTTCAAGATCTTGATTCTGACCAAGAAAATAAGTCCGAGAAA 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 21 ATGGCAGGGAAGAGGTTATTCCAAGATCTTGATTCCGACCAAGAAAATAAGTCCGAGAAA 80
Query 61 CGGATTAAATCTGTACTACCATCCCTTGCCTCGCCAATTTCCAGTGTGTTTGGAGCATTG 120
||||||||||||| ||||||||| | | ||| | | ||||||||||||||||
Sbjct 81 CGGATTAAATCTG---TACCATCCC-T---T-GCC----T-C--TGTGTTTGGAGCATTG 125
Query 121 ATCTCAGAAAACACCCTT-----C-GTTC-T--GTCCTAGAGCCCGTTATTAGAAAAGTT 171
||| |||||||||||||| | ||| | | ||||||||||||| |||||||||||
Sbjct 126 ATCACAGAAAACACCCTTAAGAGCTTTTCTTCAGCCCTAGAGCCCGTTCTTAGAAAAGTT 185
Query 172 GTAAGACAAGAAGTGGAATATGGAATTAGTAAACGATTTCGATTA-TCTCGGTCATCGTC 230
|||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 186 GTAAGACAAGAAGTGGAATATGGAATTAGTAAACGATTCCGA-TATTCTCGGTCATCGTC 244
Query 231 TTTCCGTATCGAAGCTCCGGAGGCGACTACTCCGACACTGAAGCTAATTTTCCGTAAGAA 290
||||||||||||||||||||| | | ||||||||||| | |||||||| ||||||||||
Sbjct 245 TTTCCGTATCGAAGCTCCGGAAGAGTCTACTCCGACATTCAAGCTAATGTTCCGTAAGAG 304
Query 291 CTTAATG-ACACCAATATTTACAGGGAGTAAAATCAGTGACGTGGACAACAATCCACTTG 349
||||| | ||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 305 CTTAA-GTACACCAATATTCACCGGGAGTAAAATCATTGACGTGGACAACAATCCACTTG 363
Query 350 AGATTATCCTTGTTGATGACTCAAACAAGCCGGTGAATCTCAACCGTCCAATCAAACTAG 409
||||||||||||||||||| ||||||| |||||||||||| ||||| | ||||||||||
Sbjct 364 AGATTATCCTTGTTGATGATTCAAACATTCCGGTGAATCTCGACCGTTCGATCAAACTAG 423
Query 410 ACATCGTTGCTCTTCACGGAGATTTTCCTTCGGGTGATAAATGGACTAGTGATGAGTTTG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 ACATCGTTGCTCTTCACGGAGATTTTCCTTCGGGTGATAAATGGACTAGTGATGAGTTTG 483
Query 470 AGAGTAACATCATCAAAGAAAGAGATGGGAAACGGCCGTTACTTGCCGGAGAAGTAAGTG 529
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 484 AGAGTAACATCATCAAAGAAAGAGATGGGAAACGGCCGTTACTTGCTGGAGAAGTAAGTG 543
Query 530 TGACGGTGAGAAACGGCGTTGCAACAATCGGAGAAATTGTGTTCACAGACAATTCGAGTT 589
|||||||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 544 TGACGGTGAGGAACGGCGTTGCAACGATCGGAGAGCTTGTGTTCACAGATAATTCGAGTT 603
Query 590 GGATTCGTAGCCGTAAGTTTAGAATCGGTGCGAAAGTTGCGAAAGGGAGTAGCGGTCAAG 649
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 604 GGATTCGTAGCCGTAAGTTTAGAATCGGTGCGAAAGTTGCCAAAGGGAGTAGCGGTCAAG 663
Query 650 GCGTTGTGGTTTGTGAAGCGATGACTGAAGCGATTGTTGTTAGAGATCATCGTGGAGAAT 709
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GCGTTGCGGTTTGTGAAGCGATGACTGAAGCGATTGTTGTTAGAGATCATCGTGGAGAAT 723
Query 710 TGTACAAGAAACATCACCCACCAATGTTAGAAGACGAAGTGTGGCGGCTAGAGAAGATAG 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TGTACAAGAAACATCACCCACCAATGTTAGAAGACGAAGTGTGGCGGCTAGAGAAGATAG 783
Query 770 GCAAAGATGGGGCCTTTCACAAGAAGCTCTCCTCTCGCCACATCAACACTGTCCAAGACT 829
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 784 GCAAAGATGGGGCCTTTCACAAGAAGCTCTCCTCTAAACACATCAACACTGTCCAAGACT 843
Query 830 TTTTGAAACTATCCGTCGTTGACGTCGACGAACTCCGTCAGATTCTGGGGCCTGGAATGT 889
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 844 TTTTGAAACTATCCGTCGTTGACGTCGACGAACTCCGTCAGATTTTGGGCCCTGGAATGT 903
Query 890 CTGATAGAAAGTGGGAAGTAACATTGAAACATGCTAGAGAGTGTATTTTGGGAAATAAGT 949
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 904 CTGATAGAAAGTGGGAAGTAACATTGAAACATGCTAGAGAGTGTATTATGGGAAATAAGT 963
Query 950 TATACATTTCTAGAGGACCGAATTTTTTCATGATTTTGAATCCGATATGCGAAGTTATGA 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 964 TATACATTTCTAGAGGACCGAATTTTTTCATGATTTTGAATCCGATATGCGAAGTCATGA 1023
Query 1010 AAGCACTTATCGATGGTCATGTTCTCTCTAGTCAAGAATCCCTCAACCAGCCCTACGTTA 1069
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1024 AAGCACTTATCGATGGTCATGTTCTCTCTAGTCAAGAATCCCTGAATCAGCCCTATGTTA 1083
Query 1070 AGAACTTAGTTCGAGATGCTTACTCAAAGGGGAACTTTTTAGAAGTGGGCGAACGAACAG 1129
|||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct 1084 AGAACTTAGTTCGAGATGCTTACTCAAAAGGAAACTTGTTAGAAGTGGGCGAAGGAACAG 1143
Query 1130 CGAACGAGGCTGCTCTTTTGACACAAGGTGATGATTTGGACCAACAATATGCTGCGAGCC 1189
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 1144 CGAACGAGGCTGCTCTTTTGACACAAGGTGATAATTTGGACCAACAATATGTTGCGGGCC 1203
Query 1190 ACTACCAAAACATCGAAATCGATAAATCATATCAACAAAACGGATATGTTCAAGAGAGAT 1249
| ||| | |||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 1204 ATTACGACAACATCGAAATCAATAGATCATCTCAACAAAACGGATATGTTCAAGAGAGAA 1263
Query 1250 CTACAAACAATTTGGAGATAGTAAACGAAGGGTATATAACGACTCCAGCGGAATTCAATA 1309
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1264 CTACAAACAATTTGGAGATAGTAAACGAAGGGTATATAACGACTCAAGCGGAATTCAATA 1323
Query 1310 TATGTTTCACCGGATCTTCGTCTCAAAATCATATAAACCCTTTCTAAATCCTCATCTACG 1369
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1324 TATGTTTCACCGGATCTTCGTCTCAAAACCATATAAACCCTTTCTAAATCCTCATCTGCG 1383
Query 1370 TTAGTATT 1377
||||||||
Sbjct 1384 TTAGTATT 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63382167680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5