BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73810.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926758 jgi|Araly1|926758|scaffold_202319.1 1823 0.0
> Ahg926758 jgi|Araly1|926758|scaffold_202319.1
Length=1298
Score = 1823 bits (987), Expect = 0.0
Identities = 1205/1307 (92%), Gaps = 28/1307 (2%)
Strand=Plus/Plus
Query 68 GTTTCAGCAGACTCACAAAATAATGAAAAAGAGCCAAGAAACGCAAGAAGACTCTCTTCA 127
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 GTTTCAGCAGACTCA-AAAATAATGAAGAAGAGCCAAGAAACGCAAGAAGACTCTCTACA 59
Query 128 ACAAGAAAGTCG-TCATCAACTTCACCAAATCGTCATATCCAAGATATT-AAGATCTCAT 185
|||||||||||| | ||||||||||||||||| ||||||| |||||||| || |||||||
Sbjct 60 ACAAGAAAGTCGAT-ATCAACTTCACCAAATCTTCATATCGAAGATATTCAA-ATCTCAT 117
Query 186 AGATTCTTCCAAAAC-CTCGTCTTGTATTCGTTTCTTATCGGTTTCGGATTCGGACTCGG 244
|||||||||| || | ||||| ||||||||||| |||||||||||||||||||| || ||
Sbjct 118 AGATTCTTCC-AAGCTCTCGTGTTGTATTCGTTGCTTATCGGTTTCGGATTCGGGCTAGG 176
Query 245 CTTCATACTCAACGTCCATATAAGAAACGTCTCTTTCAATCCTCAACTCTTTCGTCTATC 304
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 177 CTTCATACTCAACGTCCATATAAGAAACGTCTCTTTCAATCCCCAACTCTTTCGTCTGTC 236
Query 305 TTCACTCTCCCCAT-CATC-CTTC-T-CTACAC--CACCGCTTCAACCGCAGCCAGA-AA 357
| | ||| |||| | | || | || | || | | |||||||||||||||||||||| ||
Sbjct 237 TGCTCTCCCCCCCTCCCTCTCATCTTCCTTCTCTACACCGCTTCAACCGCAGCCAGAGAA 296
Query 358 TAGTCGTTCCCTTGAATGATACGGTTGTTGCGACTAATGATGATGACCATGAAGTAGGGC 417
||||||| ||||||| |||||||||||||||||| |||||||||| | | | |||||
Sbjct 297 -AGTCGTTTCCTTGAACGATACGGTTGTTGCGACTGATGATGATGA-C--G-A--AGGGC 349
Query 418 AAAAGGGTCATTATCTGATGATGCCGGAGAACGTGGTGCATAACATGACGGAGGAGGAAC 477
|||||||||||| |||| ||| ||||||||||||| |||| |||||||||||||||||||
Sbjct 350 AAAAGGGTCATTCTCTGGTGAAGCCGGAGAACGTGATGCACAACATGACGGAGGAGGAAC 409
Query 478 TCTTGCTACGTGCTTCGAAGATTCAAGAAAAGACGTTGAAGATGACAAAGAAAGCGGCGT 537
| || |||||||| || |||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 410 TATTTCTACGTGCATCAAAGATTCAAGAAAAGACGTTAAAGAAGACAAAGAAAGTGGCGT 469
Query 538 TTATGTTCCTGACGAGAGGGAAGCTTCCTTTGGCTAAACTGTGGGAGAGATTTTTCAAAG 597
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 TTATGTTCTTGACTAGAGGGAAGCTTCCTTTGGCTAAACTGTGGGAGAGATTTTTCAAAG 529
Query 598 GCCATGAAGGTCTTTTCTCTATTTACATTCATACGAGTGACCCTTTTTACTTTGACGATC 657
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 530 GCCATGAAGGTCTTTTCTCTATTTACATTCATACGAGTGACCCTTTTTACGTTGACGATG 589
Query 658 ATA-CGCCCGAAACTTCGCCGTTTTATCGCCGGAGGATTCCAAGCAAGGAAGTGGGATGG 716
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATATC-CCCGAAACTTCGCCGCTTTATCGCCGGAGGATTCCAAGCAAGGAAGTGGGATGG 648
Query 717 GGAATGGTGAGCATGGTGGCGGCTGAGCGACGGCTACTGGCAAATGCTCTGCTTGACGCC 776
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GGAATGGTGAGCATGGTGGAGGCTGAGCGACGGCTACTGGCAAATGCTCTGCTTGACGCC 708
Query 777 GGAAACCACCGCTTCGTCCTCCTCTCGGAATCGGACATTCCTCTCTTTAACTTCTCCACC 836
||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 709 GGAAACCACCGTTTTGTCCTTCTCTCGGAATCGGACATTCCTCTCTTTAACTTCTCCACT 768
Query 837 ATTTACTCTTACCTCATAAACTCGCAACACTCCTACGTCGACGTCTACGACCTTCCCGGA 896
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 769 ATTTACTCTTACCTCACAAACTCTCAACACTCCTACGTCGACGTCTACGACCTTCCCGGA 828
Query 897 CCAGCAGGTCGCGGCCGCTACAACCGCCGTATGTCACCAGTCATCAGCCGCAC-CAACTG 955
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 829 CCAGCAGGTCGCGGCCGCTACAACCGCCGTATGTCACCAGTCATCAGCCGC-CGCAACTG 887
Query 956 GCGAAAAGGCTCTCAGTGGTTCGAGATAGACCGTGAGGTAGCTTTAGCCGTAGTATCGGA 1015
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 888 GCGAAAAGGCTCGCAGTGGTTCGAGATAGACCGTGAGGTAGCTTTAGCCGTAGTCTCGGA 947
Query 1016 CACAACTTACTTTCCTGTGTTCGAGAAATATTGCCTTTGGAATTGTTATGCCGACGAGCA 1075
|||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||
Sbjct 948 CACAACTTACTTTCCTGTGTTCAAGAAACATTGCCTTTCGAATTGTTATTCCGACGAGCA 1007
Query 1076 TTACTTGTCAACATTTGTCCACGCCATGTTTCCGGGGAAGAATGCGAACCGGTCACTAAC 1135
||||||| | ||||| ||||||| ||||||||| |||||||| |||||||||||||| ||
Sbjct 1008 TTACTTGGCGACATTAGTCCACGTCATGTTTCCAGGGAAGAACGCGAACCGGTCACTGAC 1067
Query 1136 GTGGACGGATTGGTCACGGAGAGGTCCACATCCGAGGAAGTACACAAGGCGGTCGGTGAC 1195
|||||||||||||||||||||||| |||||||| || ||||||||| || ||||||||||
Sbjct 1068 GTGGACGGATTGGTCACGGAGAGGGCCACATCCAAGAAAGTACACACGGGGGTCGGTGAC 1127
Query 1196 AGGGGAGTTTCTGCGGAGGGTGAGGAATAGAGAACAAGGGTGTGTGTATAATGGGAAGAA 1255
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GGGGGAGTTTTTGCTGAGGGTGAGGAATAGAGAACAAGGGTGTGTGTATAATGGGAAGAA 1187
Query 1256 GAGCGAGAAATGTTACTTGTTCGCTAGGAAGTTCGATGGTAGTACTTTGGATAAGTTGTT 1315
|||||||||||||| ||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1188 GAGCGAGAAATGTTTCTTGTTCGCTAGGAAGTTCGATGCTGGTTGTTTGGATAAGTTGTT 1247
Query 1316 ATATTTTGCTCATAGTGTTATGGGATTTTAATTTTCTTCGTTATAAC 1362
||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 1248 ATATTTTGCTCATAGGGTTATGGGATTTTAGT---CTTCGTTATAAC 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5