BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73820.1
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926759 jgi|Araly1|926759|scaffold_202320.1 944 0.0
> Ahg926759 jgi|Araly1|926759|scaffold_202320.1
Length=624
Score = 944 bits (511), Expect = 0.0
Identities = 573/604 (95%), Gaps = 0/604 (0%)
Strand=Plus/Plus
Query 52 CGATGAGGTTCCGGTACGCAATGGTTTGTTCGTCGAATCAGAACCGGAGCATGGAAGCTC 111
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 21 CGATGAGGTTCCGGTACGCTATGGTATGTTCGTCGAATCAGAACCGGAGCATGGAAGCTC 80
Query 112 ACGCTCTTCTTAAGAGACAAGGACTCGACGTTGCTTCGTACGGGACTGGGTCACATGTAA 171
|||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 81 ACGCTCTTCTGAAGAGGCAAGGTCTCGACGTTGCTTCGTACGGGACTGGGTCTCATGTAA 140
Query 172 AACTACCTGGACCATCTCTGAGAGAGCCAAACGTTTACGACTTTGGAACTCCTTACAAGC 231
|||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||
Sbjct 141 AACTACCTGGACCATCGGTCAGAGAGCCTAACGTCTACGACTTTGGAACTCCTTACAAGC 200
Query 232 AGATGTTCGATGAGCTCAGGCGCAAAGATCCTGAACTATACAAGCGGAATGGTATTTTGC 291
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 201 AGATGTTCGAAGAGCTCAGGCGCAAAGATCCTGAACTTTACAAGCGGAATGGTATATTAC 260
Query 292 AGATGATTAAGAGGAATTTATCCGTGAAACTTGCTCCTCAAAGATGGCAAGATAATGCTG 351
||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 261 AGATGCTTAAGAGGAATTTATCTGTGAAGCTTGCTCCTCAAAGATGGCAAGATAATGCTG 320
Query 352 GTGATGGTGTGTTTGATGTGGTTATGACTTTTGAAGAAAAGGTTTTCGATTCAGTCCTTG 411
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 321 GTGATGGTGTGTTTGATGTGGTTATGACTTTTGAGGAAAAGGTTTTTGATTCTGTCCTTG 380
Query 412 AAGATCTCAACAACAGAGAACAATCACTTACGAAAACAATACTTGTGATGAACTTGGAGG 471
||||||| || ||||||||||| || |||| |||||| ||||||||||||||||||||||
Sbjct 381 AAGATCTTAATAACAGAGAACAGTCGCTTATGAAAACCATACTTGTGATGAACTTGGAGG 440
Query 472 TTAAAGATAACCACGAAGAAGCAGCTATAGGTGGCCGACTTGCCTTGGAACTCTGTCAAG 531
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 441 TTAAAGACAACCACGAAGAAGCAGCTATTGGTGGCCGACTTGCCTTGGAACTCTGTCAAG 500
Query 532 AGATTGAAGGGAATGAAACATGGGAAGATACGATCGATGACATTGTTGCGGGTTTTGAAA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AGATTGAAGGGAATGAAACATGGGAAGATACGATCGATGACATTGTTGCGGGTTTTGAAA 560
Query 592 AACAACACAGGCGGAAACTGGTCTACAGCATCTCATTCTACTGAAGATACCATCATCAGT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 561 AACAACACAGGCGGAAACTGGTCTACAGCATCTCATTCTACTGAAGATACCATCAGCATT 620
Query 652 CGCA 655
||||
Sbjct 621 CGCA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31947004446
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5