BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73830.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476520 jgi|Araly1|476520|fgenesh2_kg.2__1650__AT1G73830.1 1387 0.0
Ahg312791 jgi|Araly1|312791|fgenesh1_pm.C_scaffold_1001571 453 1e-126
> Ahg476520 jgi|Araly1|476520|fgenesh2_kg.2__1650__AT1G73830.1
Length=892
Score = 1387 bits (751), Expect = 0.0
Identities = 846/890 (95%), Gaps = 14/890 (2%)
Strand=Plus/Plus
Query 58 GAATCTCTCTTCTGATTTTCAGACATTTACAAT-G--GATGATCCCATAAGACAACTAGC 114
|||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||
Sbjct 9 GAATCTCTCTTCTGATTTTCAGACATTTACGATGGATGATGATCCCATAACACAACTAGC 68
Query 115 AGAACTGAGCAACACGCTTCATCATTTCCAAACAtttcctcctcctttctcttcttctct 174
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 69 AGAACTGAGCAACACTCTTCATCAGTTCCAAACATTTCCTCCTCCTTTCTCTTCTTGTCT 128
Query 175 cgattctcttttctttcATAATCAATTCCCTGATCATTTTCCCGGAAAATCTCTCGAGAA 234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 129 CGATTCTCTTTTCTTTCATAATCAATTCCCTGATCATTTTCCCGGAAAACCTCTCGAGAA 188
Query 235 TAATTTTCATCAAGGGATATTCTTCCCTTCTAATATCCAAAACAACGA-AGAGTCTTCTT 293
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 189 TAATTTTCACCAAGGGATATTCTTCCCTTCTAATATCCAAAACAACGACA-AGTCTTCTT 247
Query 294 CACA-ATTCGATACCAAGAAGAGAAAATCATTAATGGAAGCTGTTTCTACGTCGGAGAAC 352
|| | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 248 CA-AGAGTCGATACCAAGAAGAGAAAATCATTAATGGAAGGTGTTTCTACGTCGGAGAAC 306
Query 353 AGTGTCTCTGATCAAACTCTCTCTACCTCTTCTGCTCAAGTTTCCATAAATGGAAATA-T 411
||||||||||||||||| ||||| | ||||||||||||||||||| | |||||||||| |
Sbjct 307 AGTGTCTCTGATCAAACCCTCTCAAGCTCTTCTGCTCAAGTTTCCCTCAATGGAAATAGT 366
Query 412 TTCGACAAAAAATAATTCTTCaaggagagggaagaggtcgaagaatagagaagaagagaa 471
|| ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 367 TT-GACCAAAAATAATTCTTCAAGAAGAGGGAAGAGGTCGAAAAATAGAGAAGAAGAGAA 425
Query 472 agagagagaagTTGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCAT 531
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 426 AGATAGAGAAGTTGTTCATGTAAGAGCCAGAAGAGGCCAAGCCACTGATAGCCACAGCAT 485
Query 532 AGCAGA-ACGGGTTCGACGAGGGAAAATAAACGAGAGATTGAAATGCTTGCAAGATATAG 590
|||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 486 AGCAGAGA-GGGTTCGACGAGGGAAAATAAATGAGAGATTGAAATGCTTGCAAGATATAG 544
Query 591 TCCCCGGATGTTATAAGACAATGGGAATGGCTACTATGCTTGATGAGATAATTAATTACG 650
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 545 TCCCCGGATGTTATAAGACGATGGGAATGGCTACTATGCTGGATGAGATAATTAATTACG 604
Query 651 TCCAGTCCTTACAAAATCAAGTCGAGTTTTTATCTATGAAGCTTACAGCAGCAAGTTCGT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TCCAGTCCTTACAAAATCAAGTCGAGTTTTTATCTATGAAGCTTACAGCAGCAAGTTCGT 664
Query 711 ATTATGACTTTAACTCGGAGACTGATGCTGTGGAATCCATGCAGAAGGCAAAGGCACGTG 770
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 665 ATTATGACTTTAACTCGGAGACTGATGCTGTGGAATCCATGCAGAGGGCAAAGGCACGTG 724
Query 771 AGGCAGTGGAGATGGGTCAAGGGAGGGATGGGAGTTCTGTCTTCCATTCATCATCGTGGA 830
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 725 AGGCAGTGGAGATGGGGCAAGGGAGGGATGGGAATTCTGTCTTCCATTCATCATCATGGA 784
Query 831 CCctttgacttttgttttttgctctcctttttttgtctttctaattttcttccttttttt 890
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 785 CCCTTTGACTTTTGTTTTT-GCTCTCCTTTTTTTGTCTTTCTAATTTTCT-CCTTCTTTT 842
Query 891 ggatt-taaaaagatacttttaaagattaatttCAAGAAATCTCGATGCC 939
||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 843 GGATTATAAAAATATACTTTCAAAGATTAATTTCAAGAAATCTCGATGCC 892
> Ahg312791 jgi|Araly1|312791|fgenesh1_pm.C_scaffold_1001571
Length=3432
Score = 453 bits (245), Expect = 1e-126
Identities = 339/384 (88%), Gaps = 7/384 (2%)
Strand=Plus/Plus
Query 460 agaagaagagaaagagagagaagTTGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGA 519
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 3051 AGAAGACGAGAAAGAGAGAGAAGTTGTTCATGTGAGAGCCAGAAGAGGCCAAGCCACTGA 3110
Query 520 TAGCCACAGCATAGCAGAACGGGTTCGACGAGGGAAAATAAACGAGAGATTGAAATGCTT 579
|||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 3111 TAGCCACAGCTTAGCAGAACGGGTTCGGCGAGGGAAAATAAACGAGAGATTGAGATGCTT 3170
Query 580 GCAAGATATAGTCCCCGGATGTTATAAGACAATGGGAATGGCTACTATGCTTGATGAGAT 639
||||||||| || ||||||||||||||| | |||||||||||||| |||||||| |||||
Sbjct 3171 GCAAGATATGGTTCCCGGATGTTATAAGGCTATGGGAATGGCTACGATGCTTGACGAGAT 3230
Query 640 AATTAATTACGTCCAGTC-CTTACAAAATCAAGTCGAGTTTTTATCTATGAAGCTTACAG 698
||||||||| |||||||| || ||| |||||||||||||| | || ||||| || || |
Sbjct 3231 AATTAATTATGTCCAGTCTCT-ACAGAATCAAGTCGAGTTCCTCTCGATGAAACTCACTG 3289
Query 699 CAGCAAGTTCGTATTATGACTTTAACTCGGAGACTGATGCTGTGGAATCCATGCAGA-AG 757
|||||||||||| ||||||||||||||| ||||| ||||| || || |||||||||| ||
Sbjct 3290 CAGCAAGTTCGTTTTATGACTTTAACTCAGAGACCGATGCAGTTGATTCCATGCAGAGAG 3349
Query 758 GCAAAGGCACGTGAGGCAGTGGAGATGGGT---CAAGGGAGGGATGGGAGTTCTGTCTTC 814
|||||||||||||| ||||||||||||| ||| || ||||||||| ||||||||
Sbjct 3350 -CAAAGGCACGTGAGACAGTGGAGATGGGGAGACAAACAAGAGATGGGAGTCCTGTCTTC 3408
Query 815 CATTCATCATCGTGGACCctttga 838
|||| |||| | ||| ||||||||
Sbjct 3409 CATTTATCAACATGGTCCCTTTGA 3432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5