BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73840.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476521 jgi|Araly1|476521|fgenesh2_kg.2__1651__AT1G73840.1 2194 0.0
> Ahg476521 jgi|Araly1|476521|fgenesh2_kg.2__1651__AT1G73840.1
Length=1456
Score = 2194 bits (1188), Expect = 0.0
Identities = 1376/1465 (94%), Gaps = 20/1465 (1%)
Strand=Plus/Plus
Query 2 CAGGTTAAGCTCGGTAGCGATTACCGACGAGAACCATGGCGGGTAAGCAGATCGGCGGAG 61
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAGGTTAATCTCGGTAGCGATTACCGACGAGAACCATGGCGGGTAAGCAGATCGGCGGAG 60
Query 62 ACGGAGGTTTACCGGCAAATCTCGCCGGAATGACTAAAAGTCAGCTCTATGATATTATGT 121
| || ||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 61 ATGGCGGTTTACCGGCAAATCTCGCCGGAATGACAAAAAGTCAGCTCTACGACATTATGT 120
Query 122 CTCAAATGAAGACGTTGATTGATCAAAACCATCAACAAGCGAGGGAGATTCTGATTCGGA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCAAATGAAGACGTTGATTGATCAAAACCATCAACAAGCGAGGGAGATTCTGATTCGGA 180
Query 182 ACCCTCTTTTGACGAAGGCTCTTTTCCAGGCACAAATCATGCTCGGAATGGTTCAGCCTC 241
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 ACCCTCTTTTGACCAAGGCTCTTTTCCAGGCACAAATCATGCTTGGAATGGTTCAGCCTC 240
Query 242 CTCAAGTGACTCCGAAAGTTGAGCCACAAGCTGTACAACAACCTCAACAATCTCATCAAT 301
| ||| ||||||| |||||||| ||||||||| | ||||| ||||||||||||||||||
Sbjct 241 CGCAACTGACTCCCAAAGTTGAACCACAAGCTATGCAACAGCCTCAACAATCTCATCAAC 300
Query 302 CTATCCCGCCAAAGCCAAACGTTCAAGCTCATATGTCTTCT-TTCCAAGGCGGTGGCAGT 360
|||| || | ||||||||||||||||||||||||||||||| || ||||| || ||||||
Sbjct 301 CTATACCTCTAAAGCCAAACGTTCAAGCTCATATGTCTTCTATT-CAAGGGGGAGGCAGT 359
Query 361 GTACATGAGCCAGCCAATACGATGCAGCCACAAGCCCCGATTCGAAAACACCCAACACCA 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTACATGAGCCAGCAAATACGATGCAGCCACAAGCCCCGATTCGAAAACACCCAACACCA 419
Query 421 CAACCAATGCCTATGCCTCCACCACCGCCTTCTGTTTCTGC-A--AATAGTGCTCAATCA 477
|||||||||||||||||| || ||||||||||||||||| | |||| ||||||||||
Sbjct 420 CAACCAATGCCTATGCCT---CCTCCGCCTTCTGTTTCTGCAACCAATAATGCTCAATCA 476
Query 478 CAGCCTCGTTTTTCGCATCCCCAGCGTCAGGGACATCTGAATCCTGCTGTCACTTCTATG 537
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 CAACCTCGTTTTTCGCATCCCCAGCGTCAGGGACATCTGAATCCTACTGTCACTTCTATG 536
Query 538 TCTCATCCACAGTCTTCTCAAGTTCAAAACGCGCCTCCTCCGGCTTCCCATCATCCAACA 597
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 537 TCTCATCAACAGTCTTCTCAAGTTCAAAACGCGCCTCCTCCGGCTCCCCATCATCCAACA 596
Query 598 TCCCAGCAACCTCCTTTTCATCATCTTGATATACCAGCTTCCTCCACTCAGTTGCAACAA 657
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 TCCCAGCCACCTCCTTTTCATCATCTTGATATACCAGCTTCCTCCACTCAGTTGCAGCAA 656
Query 658 CAACCAATGCACTCTGGTGGAGGTCCTCATGTGGCACAGCAACAGTCTAGACCATATCAT 717
|||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 657 CAACCAATGCACTCGGGTGGAGGTCCTCATTTGGCACAGCAACAGCCTAGACCATATCAT 716
Query 718 CATCAATATGGACAAGCTCAAACTGGTCCAAACACTGGATTTCAGCACCATGGCGCACCT 777
||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 717 CATCAATATGGACAAGCCCAAACTGGTCCAAACACTGGGTTTCAGCACCATGGCACACCT 776
Query 778 ACTCAGCATCTTTCTCAACCCATGTATCATTCAGGCAACAGACCCCCTGCTTCCGGTGGA 837
|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| |
Sbjct 777 CCTCAGCATCTTTCTCAACCCATGTTTCATTCAGGCAACAGACCCCCTGCTGCTGGTGTA 836
Query 838 CCTCAATTCCCGCAGGGACAGCCACATCTGCCTAGTCAGCCAACATATCAGGGAGGAGGT 897
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 837 CCTCAATTCCCGCAGGGACAGCAACATCTGCCTAGTCAGCCAACATATCAGGGAGGAGGT 896
Query 898 CAATATCGTGGAGACTACAACAATAACCAATTAGCAGGTCTGATGGCTCAAGACAGAGGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CAATATCGTGGAGACTACAACAATAACCAATTAGCAGGTCTGATGGCTCAAGACAGAGGT 956
Query 958 CCTTCTTGGATGGCTGGCCAATCAGAGAGCTCGAACATTACTCATCTGCCAGGCTTAGGA 1017
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 957 CCTTCTTGGATGGCTGGCCAATCAGAGAGCTCAAACATTACTCATCTCCCAGGTTTAGGA 1016
Query 1018 CCGGTGCCTCCACCAAGCCAAGTTGGGCCTGGAGGTGGCCCACCACCTCGCCCTGCACCG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CCGGTGCCTCCACCAAGCCAAGTTGGGCCTGGAGGTGGCCCACCACCTCGCCCTGCACCG 1076
Query 1078 ATATCTGCAGAGATGGAGAAGGCACTACTTCAACAAGTGATGAGCCTTACACCAGAGCAG 1137
|||||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||
Sbjct 1077 ATATCTGCAGAGATGGAGAAGGCATTACTTCAACAGGTGATGAGCCTAACGCCAGAGCAG 1136
Query 1138 ATCAATCTGCTGCCACCAGAACAGAGAAACCAAGTCCTTCAGCTTCAACAGATTCTCCGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ATCAATCTGCTGCCACCAGAACAGAGAAACCAAGTCCTTCAGCTTCAACAGATTCTCCGA 1196
Query 1198 CAGTGAATCTCATAGATA--ATCGCTTGGTCTCCTCCATGTTAGAACTTT-GAAGAGACA 1254
||||||| ||||| |||| |||||||||||||| |||||||||| || ||||| |||
Sbjct 1197 CAGTGAAGCTCATTGATATGATCGCTTGGTCTCC---ATGTTAGAACATTAGAAGAAACA 1253
Query 1255 GGTTTTGGCTTTGAATGTAAGGCCTGAGTTAAGTTTGGGATAATTTGTAAAAAGAAGAAA 1314
|||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 1254 GGTTTTGGCTTTGAATGTAAT-CG-GAGTTAAGTTTGGGATAATTTGTAAAAAGAAAAAA 1311
Query 1315 A---GTAATTAGATTTTTTC-AAAGTTCAAGGTATCACTAAATACCTTTGGTCATATCCC 1370
| |||||||||| ||||| |||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1312 AAAAGTAATTAGATGTTTTCCAAAGTTCAAGGTGTCACTTAATACTTTTGGTCATATCCC 1371
Query 1371 CTGGAGAAAATTTATGTGTTCTCTTTGATTTAATGTTCAGTAACAATTTTCTTCCTGAAT 1430
|||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 1372 CTGGAGAAAATTCATGTGTTCTCTTTGATTTAATGTTCGGTAACAATTTTTTTCCTGCCT 1431
Query 1431 TTCAAAGTTACGAAATCTTGCTTAC 1455
||||||||| ||| ||||| ||||
Sbjct 1432 TTCAAAGTTCCGATGTCTTGTTTAC 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5