BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73850.1
Length=2091
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926763 jgi|Araly1|926763|scaffold_202324.1 2575 0.0
> Ahg926763 jgi|Araly1|926763|scaffold_202324.1
Length=1724
Score = 2575 bits (1394), Expect = 0.0
Identities = 1624/1734 (94%), Gaps = 20/1734 (1%)
Strand=Plus/Plus
Query 317 gaagaagaaggggaagaaCTCAAGATGTCGTGTAACTCAAGTTACCATGTGATATCTAGA 376
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 GAAGAAGAAGGGGAAGAATTCAAGATGTCGTGTAACACAAGTTACCATGTGATATCTAGA 60
Query 377 GATCCAAATCCGGATTTGATAGCTGATATAGCAGACGACGGAGAATCTTTAGTGTTTTAC 436
|||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GATCAAAATCCAGATTTGATAGCTGATATAGGGGACGACGGAGAATCTTTAGTGTTTTAC 120
Query 437 AATAATATTTCTCAAGGAGGAGTAAATAATCAACACACG-A--AGGAGTTCAATAATGTC 493
||||||| |||||||| ||| || ||||||||||||| | |||||||||||||||||
Sbjct 121 AATAATAACTCTCAAGGTGGACTATGTAATCAACACACGAAGGAGGAGTTCAATAATGTC 180
Query 494 TATCAAACTCATGAACACGAAGAAGAGGAAGAAGATGATCAAGATTCTAACACTTCTTCT 553
|||||||||||||||||| | | | |||||||||||||||||||| ||||||||||||
Sbjct 181 TATCAAACTCATGAACAC---G-A-A-GAAGAAGATGATCAAGATTCCAACACTTCTTCT 234
Query 554 ACAGAGGAGCACTTTTCTTCTGCCAATGTTTCTCCTTATCGCAGTGAATCATCAATAGAA 613
|| ||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct 235 ACGGAGGAACACTTTTCTTCTGCCAATGTTTCTCCTTATCACAGCGAATCATCAGTAGAA 294
Query 614 GAGGAAGATGATGGCGTTGAAGATCTTCCTGACGATCGTTATGATGATGATGACGAAGAT 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GAGGAAGATGATGGCGTTGAAGATCTTCCTGACGATCGTTATGATGATGATGACGAAGAT 354
Query 674 GAAGAGGTAGGAGGAGTGTCACGATACGACGTCGTTGAGGATTTGGTTCGTAAGCAACC- 732
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 355 GAAGAGGTAGGAGGAGTGTCACGATACGATGTCGTTGAGGATTTGGTTCGTAAGCAACCA 414
Query 733 AA-A-TACTACTAGTACTCGTGGTCCCTCTCGTTTCCAAAGTGGTTTGGTGTTCAATGAC 790
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AATACTACTACTAGTACTCGTGGTCCCTCTCGTTTCCAAAGTGGTTTGGTGTTCAATGAC 474
Query 791 AAAAGTTACAATGCAAGAGAGTTTGTGTCCAATGGAGGAATCAAGAATGATGTCGACGAG 850
||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 475 AAAAGCTACAATGCAGGAGAGTTTGTGTCTAATGGAGGAATCAAGAATGATGTTGACGAG 534
Query 851 ATACAGCCATCATCGGGCTTTGACATgagagagataaaagcagaggaattagaggaagaa 910
||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 535 ATACAGCCATCATCGGGGTTTTCCATGAGAGAGATCAAAGCAGAGGAATTAGAGGAAGAG 594
Query 911 gaagaagaagagagagGACAAATATTCGGAGAGTCATGCACGAATGGGTCAACGTCGAAA 970
|||||||||||||||||| | ||||||||| |||||| |||||||||||||||||| |||
Sbjct 595 GAAGAAGAAGAGAGAGGAGAGATATTCGGACAGTCATACACGAATGGGTCAACGTCAAAA 654
Query 971 AGCTCATCGGAATGGAGAAACTCTGTCAAAACTGACGACCCTTTCTCAACGTCCTCTCGC 1030
|||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 655 AGCTCATCAGAATGGAGAAACTCTGTCAAAACCGACGACCCTTTCTCAACTTCCTCCCGC 714
Query 1031 CGGAGTTGCCCTAAATGGGAATCTTACACCGTCTTCCAAAAGTACGACGAAGAAATGACT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CGGAGTTGCCCTAAATGGGAATCTTACACCGTCTTCCAAAAGTACGACGAAGAAATGACT 774
Query 1091 TTTCTCACTAGAATCTCTGCTCAAAAGCTTCACGAAGCAGAATCTTTGAAGTCAATTATG 1150
||||||||||||||| |||||||||||||||||||| | ||||| || |||||||| |||
Sbjct 775 TTTCTCACTAGAATCACTGCTCAAAAGCTTCACGAAACTGAATCGTTAAAGTCAATCATG 834
Query 1151 GTGGAGCCAAGATCTATCTCGGAGAGGATCGTTCACAAGTTATCATCAAACGG-T--CAC 1207
|||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct 835 GTGGAGCCAAGATCGATCTCGGAGAGGATCGTTCACAAGTTATCATCAAATGGATCACAC 894
Query 1208 AAGaaaaaacaaaaaCAATATCCAGGCAGCAATGGGTCGAGACCAAACCCTTACGTGGAA 1267
|||||||||||| ||| ||||| || |||||||||||||||||||||| |||||||||
Sbjct 895 AAGAAAAAACAACAACGTTATCCTGGTGGCAATGGGTCGAGACCAAACCCGTACGTGGAA 954
Query 1268 CTAGAATCCGCTTACGTGGCACAGATATGTCTAACATGGGAAGCTCTAAGTTGGAACTAC 1327
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CTAGAATCAGCTTACGTGGCACAGATATGTCTAACATGGGAAGCTCTAAGTTGGAACTAC 1014
Query 1328 AAAAACTTCGAGAGAAAAAGATCAACCACGCAACGAAGCTTCAACGACGTAGGATGTCCC 1387
|||||||||||||||||||||||| ||| || |||||||||||||||||| ||||||||
Sbjct 1015 AAAAACTTCGAGAGAAAAAGATCATCCAGGCTACGAAGCTTCAACGACGTCGGATGTCCG 1074
Query 1388 GCCGGAATCGCCGACCAATTCCGTACGTTTCACATTCTTTTACAAAGATACGTAGAAAAT 1447
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 1075 GCCGGCATCGCCGACCAGTTCCGTACGTTTCACATTCTTTTACAAAGATACGTGGAGAAT 1134
Query 1448 GAACCTTATGAACATGGAAGAAGACCAGAGATTTATGCTCGCATGCGAACTCTTGCTCCT 1507
|| ||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||
Sbjct 1135 GAGCCTTATGAACATGGAAGAAGACCAGAGATTTATGCCCGAATGAGAACTCTTGCGCCC 1194
Query 1508 AAATTGCTTCTTGTTCCTGAATACCAAGATTATGAGGAAGAGGAGGAGAAGGAAGACGAG 1567
||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| |||
Sbjct 1195 AAATTGCTTCTTGTTCCTGAATACCAAGATTATGA-G--GAGGATGAGAAAGAAGAAGAG 1251
Query 1568 AACGAAGAGGGTTTCAGGTCGAGGATATCGTCAGCTTCGTTCTTGATGATAATGGAGGAA 1627
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1252 AAAGAGGAGGGTTTCAGGTCGAGGATATCGTCAGCGTCGTTCTTGATGATAATGGAGGAA 1311
Query 1628 TGCATAAGAACATTCATGAATTTTCTCCAAGCGGATAAAGAAAAGCCTTGTCAGAAGATC 1687
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 1312 TGCATAAGAACATTCATGAATTTTCTCAAAGCGGATAAAGAGAAGCCTTGTCAAAAGATC 1371
Query 1688 ATCAAAGCCTTTTTTGGGAGAAGTAAACGAGGCCCCGTTGATCCAACCCTTGTACATCTC 1747
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1372 CTCAAAGCCTTTTTTGGGAGAAGTAAACGAGGCTCCGTTGATCCAACCCTTGTCCATCTC 1431
Query 1748 ATGAAGAAAGTCAACACAAAGAAAAAGACGAAGCTGAAAGAGATGCGTCGAGGAGGGAAA 1807
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1432 ATGAAGAAAGTCAACAAAAAGAAAAAGACGAAGCTGAAAGAGATGCGTCGAGGAGGAAAA 1491
Query 1808 TACATGAGGAAGAAGAAGATGAGTATAGAGGAGGAAATGGAGATATTGATGGGAT-TAAT 1866
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 1492 TACATGAGGAAGAAGAAGATGAGTATAGAGGAAGAAATGGAGATATTGATGGG-TCTAAT 1550
Query 1867 AGATTTGAAAGTGGTTTCAAGAGTGTTAAGGATGAATGAAATGAACGAAGAGAATTTGCA 1926
||| ||||||||||| |||||||| || || ||||| |||||||||||||||||||||||
Sbjct 1551 AGACTTGAAAGTGGTGTCAAGAGTATTGAGAATGAAAGAAATGAACGAAGAGAATTTGCA 1610
Query 1927 TTGGTGTGAAGAGAAGATGAGCAAAGTTAAAATTATTCAAGGTGGAAAGGTGCTTCAAAG 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 TTGGTGTGAAGAGAAGATGAGCAAAGTTAAAATTATTCAAGGTGGAAAGGTGCTTCAAAG 1670
Query 1987 AGATTCCACTCCACTTTTCTTTCCTCCACATTGACCCCACTATTCTAATCTAAT 2040
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1671 AGATTCCACTCCACTTTTCTTTCCTCCACATTGACCCCACTATTTTAATCTAAT 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78656355925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5