BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73860.1
Length=3460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335100 jgi|Araly1|335100|fgenesh1_pg.C_scaffold_1001665 702 0.0
Ahg935651 jgi|Araly1|935651|scaffold_403639.1 207 3e-52
Ahg346476 jgi|Araly1|346476|fgenesh1_pg.C_scaffold_4002818 207 3e-52
Ahg479423 jgi|Araly1|479423|fgenesh2_kg.3__2124__AT3G19050.1 63.9 8e-09
> Ahg335100 jgi|Araly1|335100|fgenesh1_pg.C_scaffold_1001665
Length=2988
Score = 702 bits (380), Expect = 0.0
Identities = 556/641 (87%), Gaps = 12/641 (2%)
Strand=Plus/Plus
Query 2176 GGGATCCTTTCTACAACTCAACAAAATGGCCTGGCTGTGCCTGACGCAAGCATGTATCCT 2235
||||| |||||||||||||||||||| || || ||||| ||||| |||||||||||||||
Sbjct 1894 GGGATTCTTTCTACAACTCAACAAAACGGTCTTGCTGTACCTGATGCAAGCATGTATCCT 1953
Query 2236 GTGACATCAACTTCAGATGTGATT-ACATTGATGGA-CATTGGACTACAGAATCGAGCCG 2293
|||||||| || || ||||| || | ||| || || |||||| ||||| || |||||||
Sbjct 1954 GTGACATCCACCTCGGATGTTCTTGA-ATTAAT-GAGCATTGGGCTACAAAACCGAGCCG 2011
Query 2294 TT-GGTTCTACTGCCTTGAATGAAAGAAGTAGTCGTTCACATAGCATTGTCACTGTTCAC 2352
|| | | | ||||||||||| ||||||||||| || || || |||||||| ||||||||
Sbjct 2012 TTAGCTAC-ACTGCCTTGAACGAAAGAAGTAGCCGCTCTCACAGCATTGTGACTGTTCAT 2070
Query 2353 GTTCGCGGTAAAGATTTAAAGACCGGTTCCGTGCTATACGGTAATCTTCATTTGGTGGAT 2412
||||| || || || || ||||||||||| ||||| || || ||||| |||||||| |||
Sbjct 2071 GTTCGTGGCAAGGACTTGAAGACCGGTTCTGTGCTGTATGGAAATCTACATTTGGTAGAT 2130
Query 2413 CTGGCAGGAAGTGAGAGAGTAGATCGCTCTGAAGTTACAGGAGACAGAC-TAAGAGAAGC 2471
|||||||| ||||||||||| || ||||||||||||||||||||||||| ||| ||||||
Sbjct 2131 CTGGCAGGTAGTGAGAGAGTTGACCGCTCTGAAGTTACAGGAGACAGACTTAA-AGAAGC 2189
Query 2472 ACAACATATAAACAAGTCGCTCTCATCTCTTGGAGATGTGATATTCTCTCTCGCTTCAAA 2531
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2190 ACAACATATAAACAAGTCACTCTCATCTCTAGGAGATGTGATATTCTCTCTTGCTTCAAA 2249
Query 2532 GAGTTCTCATGTACCATACAGAAACAGCAAGCTAACACAGCTTCTCCAAACCTCTCTTGG 2591
||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||| ||
Sbjct 2250 GAGTTCTCATGTACCATACAGGAACAGCAAACTAACTCAGCTTCTCCAAAGCTCTCTAGG 2309
Query 2592 AGGACGAGCAAAGACACTAATGTTTGTGCAACTCAACCCTGACGCTACTTCATACTCAGA 2651
|| |||||||||||| | |||||||| |||||||| ||||| ||||||||| |||||
Sbjct 2310 TGGTCGAGCAAAGACATTGATGTTTGTTCAACTCAATCCTGATATTACTTCATATTCAGA 2369
Query 2652 GTCAATGAGTACCTTGAAATTTGCAGAGCGTGTCTCTGGAGTCGAACTT-GGTGCTGCAA 2710
|||||||||||| |||||||| |||||||||||||||||||| || || ||||||||||
Sbjct 2370 GTCAATGAGTACTTTGAAATTCGCAGAGCGTGTCTCTGGAGTTGAG-TTAGGTGCTGCAA 2428
Query 2711 AGA-CAAGTAAAGAAGGTAAAGATGTTCGAGACTTGATGGAACAGTTAGCGTCCCTTAAG 2769
| | || | ||||| |||| ||| ||| ||||||| ||||| ||||||| ||||||||||
Sbjct 2429 AAAGCA-GCAAAGATGGTAGAGACGTTAGAGACTTAATGGAGCAGTTAGGGTCCCTTAAG 2487
Query 2770 GACACCATAGCGAGAAAAGACGAAGAGATAGAGAGACTTCA 2810
||||| ||||||||||||||||| ||||||||| | |||||
Sbjct 2488 GACACAATAGCGAGAAAAGACGATGAGATAGAGCGGCTTCA 2528
Score = 630 bits (341), Expect = 2e-179
Identities = 724/907 (80%), Gaps = 34/907 (4%)
Strand=Plus/Plus
Query 1260 AGAGCTTGAACAAATGGGAAAAGAAGCAC-AT-TCTGCTaa-a-aatgctcttg-aggaa 1314
||||||||||| ||| ||||| || || || |||| ||| | || || |||| || ||
Sbjct 1005 AGAGCTTGAAC-AATTTAAAAAGGAG-ACAATGTCTGTTAATACAA-GC-CTTGAAGCAA 1060
Query 1315 aagattaaacagcttcaacaaatggaaaaa-gaaacaaaaacTGCTAATACAAGCCTTGA 1373
|| | | | ||||| ||| ||| ||||| || || ||| |||||||||||||||
Sbjct 1061 AA-AATCGAGAGCTTGAAC-AATTTAAAAAGGAGACGGTGACTTTTAATACAAGCCTTGA 1118
Query 1374 AG-GAAAGATCCAAGAGCTTGAACAAAACCTCGT-AATGTGGAAGACTAAAGTCAGAGAA 1431
|| ||| || | |||||||||| |||| || || | ||||||| ||||| || ||||
Sbjct 1119 AGCAAAAAAT-CGAGAGCTTGAAAAAAATCTGGTCCA-CTGGAAGAGTAAAGCCAAAGAA 1176
Query 1432 ATGG-AGAAAAAGTCTGAGTCCAACCACCAAAGATGGAGTCAGAAAGAACTTTCCTATAA 1490
|||| ||||||| || |||| || | | || |||||||||||||||||||| ||||
Sbjct 1177 ATGGAAGAAAAA-TCAGAGTTGAAGAATCGGAGTTGGAGTCAGAAAGAACTTTCGTATAG 1235
Query 1491 AAGCTTTATTGA-TAACCAGTCTC-AGGCACTACTGGAGTTGAGGTCCTATTC-AAGATC 1547
|||||||| | | | ||| | || |||| |||| |||||||||| || ||| || ||
Sbjct 1236 AAGCTTTA-TCAGTTTCCAAT-TCAAGGCGCTACAAGAGTTGAGGTTCTGTTCTAA-CTC 1292
Query 1548 CATCAAGCAAGAAATACTGAAGGTACAAGAGAACTATACAGAC-CAGTTCAGCCAACTAG 1606
|||||| ||||||||||| || || ||||| || |||||| || |||| || ||| |||
Sbjct 1293 CATCAAACAAGAAATACTAAAAGTTCAAGATAAGTATACA-ACAGAGTTTAGTCAATTAG 1351
Query 1607 GAAAGAAACTGATTGAACTTAGCA-ATGCTGCTGAAAACTATCACGCTGTACTAACTGAA 1665
| | |||| || |||||||| | | ||||||||| ||||||||||| || |||||||||
Sbjct 1352 GGAGGAAATTGCTTGAACTT-GGAGATGCTGCTGCAAACTATCACGAAGTCCTAACTGAA 1410
Query 1666 AACCGGAAGCTTTTCAACGAGCTTCAGGAGCTAAAAGGAAACATCAGAGTGTTTTGCCGG 1725
|||| ||||| ||||| || ||||||||||||||||| ||||| ||||||| ||| |||
Sbjct 1411 AACCAAAAGCTCTTCAATGAACTTCAGGAGCTAAAAGGCAACATTAGAGTGTATTGTCGG 1470
Query 1726 GTGAGGCCTTTCCTT-CCTGCACAGGGTGCAGCAAACACAGTGGTCGAGTATGTCGGTGA 1784
||||||||||| ||| | | || |||||| |||| || ||||| || | | |||||
Sbjct 1471 GTGAGGCCTTT-CTTGCGAGGGCAAGGTGCATCAAAAACTGTGGTAGAACACATTGGTGA 1529
Query 1785 AGATGGAGAATTAGTAGTTAC-CAATCCAACTAGACCCGGGAAAGACGGTCTTCGCCAGT 1843
|||| || || |||||| | ||||||||| | ||| |||||||| |||||||| | |
Sbjct 1530 TCATGGGGAGTTGGTAGTT-CTCAATCCAACAAAACCTGGGAAAGATGGTCTTCGAAAAT 1588
Query 1844 TTAAGTTCAACAAGGTGTATAGTCC-AACTGCTTCACAAGCTGACGTCTTTTCAGACATA 1902
|||||||||| ||||| || ||||| || || | |||||||| || |||||||| |||
Sbjct 1589 TTAAGTTCAATAAGGTCTACAGTCCTGCCT-CTACTCAAGCTGAGGTATTTTCAGATATA 1647
Query 1903 AGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAG 1962
| ||| || ||| | ||||| || || ||||||||||| ||||| ||||||||||| |||
Sbjct 1648 AAACCTCTTGTTCGATCAGTTCTCGACGGGTACAATGTATGTATCTTTGCATATGGTCAG 1707
Query 1963 ACAGGATCAGGGAAAACTTATACAATGACTGGTCCAGATGGATCAAGTGAAGAAGACTGG 2022
|||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||| |||
Sbjct 1708 ACAGGATCCGGGAAAACTTACACAATGACTGGTCCAGATGGAGCAAGCGAAGAAGAGTGG 1767
Query 2023 GGAGTAAATTATCGCGCTCTCAATGATCTTTTTAAAATCTCTCAGTCCAGAAAGGGAAAC 2082
|||||||| ||||| ||||||||||| || || ||||||||||| || |||| | |||
Sbjct 1768 GGAGTAAACTATCGTGCTCTCAATGACCTCTTCAAAATCTCTCAAACCCGAAAAAGCAAC 1827
Query 2083 ATATCGTATGAAGTCGGGGTGCAAATGGTGGAGATATATAATGAACAAGTGCTCGATCTG 2142
||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 1828 ATAGCGTATGAAGTCGGGGTGCAAATGGTGGAGATATACAATGAACAAGTGCGCGATTTA 1887
Query 2143 CTGTCTG 2149
|| ||||
Sbjct 1888 CTCTCTG 1894
Score = 390 bits (211), Expect = 3e-107
Identities = 352/419 (84%), Gaps = 14/419 (3%)
Strand=Plus/Plus
Query 408 AGATCCATTATCTCCTGGATCAATGCAT-CATGGAGGACACAAGTTTCATGAGGTTTTCC 466
|||||||| ||| ||||||||||||| | |||||||||||||||| || |||| |||||
Sbjct 120 AGATCCATCATCCCCTGGATCAATGC-TCCATGGAGGACACAAGTCCCACGAGGCTTTCC 178
Query 467 AAATGAAACAGGGGCG-TTATGATCTTCAAGCTTCAAAGATTTCTGAAATGATGAAATCA 525
||||||||||| | || || |||||| ||||| |||||||||| ||| |||||||||||
Sbjct 179 AAATGAAACAGTGCCGATT-TGATCTCCAAGCCGCAAAGATTTCAGAACTGATGAAATCA 237
Query 526 AGTAGCTTAGATAATGCTCCTACGCAGTCA-TTGCTAAGCGTC-TTGAATGGAATTCTAG 583
| | |||||||||||||| ||||||||| || ||||| || || ||||||||||| |
Sbjct 238 AACAATTTAGATAATGCTCCCACGCAGTCACTT-CTAAGTATCGTT-AATGGAATTCTTG 295
Query 584 ATGAAAGTATCGAAAGAAAGAATGGTGAAATCCCTCAGCGTGTGGCATGC-CTGTTAAGA 642
|||||| ||| || ||||||||||||||||||||||||||||| |||| | ||| | ||
Sbjct 296 ATGAAACTATTGAGAGAAAGAATGGTGAAATCCCTCAGCGTGTAGCAT-CTCTGCTGAGG 354
Query 643 AAAGTCGTGCAGGAGATTGAGCGGCGTATATCAACTCAAGCTGAACATCTAAGAACGCAA 702
||||| |||||||| || ||||| ||||| ||||||||| |||| |||||||||||||||
Sbjct 355 AAAGTTGTGCAGGAAATCGAGCGACGTATTTCAACTCAATCTGAGCATCTAAGAACGCAA 414
Query 703 AACAATAT-TTTCAAAACTCGCGAGGAAAAATACCAGTCAAGGATCAATGTCCTTGAAGC 761
|||| | | ||| ||| |||| ||||| || ||||||||||||||||| || |||||| |
Sbjct 415 AACAGTGTGTTT-AAAGCTCGTGAGGAGAAGTACCAGTCAAGGATCAAAGTTCTTGAAAC 473
Query 762 CTTAGCATCAGGAACTGGTGTAGAACACGAGATTGCAACACA-ACAGCTTAGACAGATA 819
|||||| ||||||||| ||| |||| | |||||||| ||| | ||| ||| ||| ||||
Sbjct 474 CTTAGCTTCAGGAACTAGTGAAGAAAATGAGATTGCTACA-AGACAACTTCGACGGATA 531
> Ahg935651 jgi|Araly1|935651|scaffold_403639.1
Length=325
Score = 207 bits (112), Expect = 3e-52
Identities = 143/158 (91%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 2240 CATCAACTTCAGATGTGATTACATTGATGGACATTGGACTACAGAATCGAGCCGTTGGTT 2299
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 28 CATCAACTTCAGATGTGATTACATTGATGGACATTGGTCTAAAGAATCGAGTCGTTGGTT 87
Query 2300 CTACTGCCTTGAATGAAAGAAGTAGTCGTTCACATAGCATTGTCACTGTTCACGTTCGCG 2359
|||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||
Sbjct 88 CTACTGCCTTGAATGAAAGAAGAAGTCGCTCCCACAGCATTGTCATTGTTCACGTTCGCG 147
Query 2360 GTAAAGATTT-AAAGACCGGTTCCGTGCTATACGGTAA 2396
| | |||||| ||| ||||||| |||||||| |||||
Sbjct 148 GCATAGATTTTAAA-ACCGGTTATGTGCTATATGGTAA 184
Score = 143 bits (77), Expect = 9e-33
Identities = 83/86 (97%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 2725 GGTAAAGATGTTCGAGACTTGATGGAACAGTTAGCGTCCCTTAAGGACACCATAGCGAGA 2784
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGTAAAGACGTTCGAGACTTAATGGAACAGTTAGCGTCCCTTAAGGACACCATAGCGAGA 239
Query 2785 AAAGACGAAGAGATAGAGAGACTTCA 2810
|||||| |||||||||||||||||||
Sbjct 240 AAAGACAAAGAGATAGAGAGACTTCA 265
> Ahg346476 jgi|Araly1|346476|fgenesh1_pg.C_scaffold_4002818
Length=321
Score = 207 bits (112), Expect = 3e-52
Identities = 143/158 (91%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 2240 CATCAACTTCAGATGTGATTACATTGATGGACATTGGACTACAGAATCGAGCCGTTGGTT 2299
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||
Sbjct 44 CATCAACTTCAGATGTGATTACATTGATGGACATTGGTCTAAAGAATCGAGTCGTTGGTT 103
Query 2300 CTACTGCCTTGAATGAAAGAAGTAGTCGTTCACATAGCATTGTCACTGTTCACGTTCGCG 2359
|||||||||||||||||||||| ||||| || || |||||||||| ||||||||||||||
Sbjct 104 CTACTGCCTTGAATGAAAGAAGAAGTCGCTCCCAGAGCATTGTCATTGTTCACGTTCGCG 163
Query 2360 GTAAAGATTT-AAAGACCGGTTCCGTGCTATACGGTAA 2396
| | |||||| ||| ||||||| |||||||| |||||
Sbjct 164 GCATAGATTTTAAA-ACCGGTTATGTGCTATATGGTAA 200
Score = 143 bits (77), Expect = 9e-33
Identities = 83/86 (97%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 2725 GGTAAAGATGTTCGAGACTTGATGGAACAGTTAGCGTCCCTTAAGGACACCATAGCGAGA 2784
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 196 GGTAAAGACGTTCGAGACTTAATGGAACAGTTAGCGTCCCTTAAGGACACCATAGCGAGA 255
Query 2785 AAAGACGAAGAGATAGAGAGACTTCA 2810
|||||| |||||||||||||||||||
Sbjct 256 AAAGACAAAGAGATAGAGAGACTTCA 281
> Ahg479423 jgi|Araly1|479423|fgenesh2_kg.3__2124__AT3G19050.1
Length=8370
Score = 63.9 bits (34), Expect = 8e-09
Identities = 46/51 (90%), Gaps = 4/51 (8%)
Strand=Plus/Plus
Query 1941 TTGTATATTTGCATATGGCCAGACAGGATCAG-GGAAAA-CTTATACAATG 1989
|||||||||||||||||||||||||||| || |||||| | |||||||||
Sbjct 804 TTGTATATTTGCATATGGCCAGACAGGA--AGTGGAAAAACATATACAATG 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130651648109
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5