BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73875.1
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316331 jgi|Araly1|316331|fgenesh1_pm.C_scaffold_2001364 1991 0.0
> Ahg316331 jgi|Araly1|316331|fgenesh1_pm.C_scaffold_2001364
Length=1362
Score = 1991 bits (1078), Expect = 0.0
Identities = 1279/1371 (93%), Gaps = 33/1371 (2%)
Strand=Plus/Plus
Query 107 ATGAGCGGATACGAGCGTAAGAACACGACGGCGAACTCAATCACCATCACCAAGCGGAAG 166
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGAGCGGATACGAGCGGAAGAACACGACGGGGAACTCAATCACCATCACCAAGCGGAAG 60
Query 167 CGTA-ACTCGATTTCGGAACAATCGGAGAACGTATACGAGAAATCGAATAGGAAGGAGTC 225
|| | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CG-ATGCTCGATTTCGGAACCATCGGAGAACGTATACGAGAAATCGAATAGGCAGGAGTC 119
Query 226 AATAACCTTAAAACCTCACCGTTCTTTTACGCCGGGATTCAGCCAGCGTGATTGTAAACC 285
||||||| |||||||||||||||||||| ||||||||| |||||| ||| ||||||||||
Sbjct 120 AATAACCCTAAAACCTCACCGTTCTTTTGCGCCGGGATCCAGCCAACGTAATTGTAAACC 179
Query 286 TGTCAGACATAGTAAGTCTTCTCTCCGCCGGCGACGGAGAACTAAGGAGAAGATCTCGAG 345
| | | ||||||||| || |||||||||||| | |||||||||||||||||
Sbjct 180 --T--G-C-------GTCTTCTCTTCGGCGGCGACGGAGAGCAAAGGAGAAGATCTCGAG 227
Query 346 TTCCGTTGAGCGCGAATGGGTGTTTTCCGCAAACAATTTTGAAAATC-TAGCAGATAAAT 404
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 228 TTCCGTTGAGCGCGAATGGGTGTTTTCCGCAAGCAATTTTGAAAATCTTA-AAGATAAAT 286
Query 405 TAGTATTAGTTTCGTACAATCTACTTGGTGTTGACAATGCGTCGAACCACATGGACTTGT 464
|||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 287 TAGTTTTAGTTTCGTACAATCTACTTGGGGTTGACAATGCGTCTAACCACATGGACTTGT 346
Query 465 ATTACAATGTTCCGCGGAAGCACTTAGAGTGGAGTAGACGGAAACATCTCATATGCAAGG 524
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 347 ATTACAATGTTCCGCCGAAGCATTTAGAGTGGAGTAGACGGAAACATCTCATATGCAAGG 406
Query 525 AGATTAGTCGTTACAATGCAAGCATCTTATGTCTT----C-A-------GGAGGTTGACC 572
|||||||||| || ||||| ||||||||||||||| | | |||||||||||
Sbjct 407 AGATTAGTCGCTATAATGCTAGCATCTTATGTCTTCAGGCAAGTTCCGGGGAGGTTGACC 466
Query 573 GCTTTGATGATTTAGATGTTCTTCTTAAAAATAGAGGATTTCGAGGTGTTCACAAGAGTC 632
||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 467 GCTTTGATGATCTAGATGTTCTTCTTAAAAATAGGGGATTTCAAGGTGTTCACAAGAGTC 526
Query 633 GGACTGGAGAAGCGAGTGATGGTTGTGCTATATTT-TGGAAAGAGAATCTATTTGAACTT 691
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||
Sbjct 527 GGACTGGAGAAGCGAGTGATGGTTGTGCTAT-TTTCTGGAAAGAGAAACTATTCAAACTT 585
Query 692 CTAGACCATCAACATATAGAGTTTGATAAATTTGGTATGCGAAACAATGTTGCTCAACTT 751
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 586 CTAGACCATCAACATATAGAGTTTGATAAATTTGGCATGCGAAACAATGTTGCTCAACTT 645
Query 752 TGTGTTTTAGAGATGAACTGTGAGGAGGACCCAAAGTCTAAATTACGGGTGCGATCATCA 811
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 646 TGTGTTTTAGAGATGAAC--TG-CGAGGACCCAAAGTCTAAATTACGTGTGCGATCATCA 702
Query 812 GATCCTCGAAGGCTAGTGGTTGGGAATATACATGTCCTATTCAATCCTAAGCGTGGGGAT 871
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 703 GATCCTCAAAGGCTAGTGGTTGGGAATATACATGTCCTGTTCAATCCTAAGCGTGGGGAT 762
Query 872 ATCAAGCTTGGCCAGGTAAGACTCTTTCTGGAGAAGGCTTACAAGCTATCACAGGAATGG 931
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATTAAGCTTGGCCAGGTAAGACTCTTTCTGGAGAAGGCTTACAAGCTATCACAGGAATGG 822
Query 932 GGAAATATTCCTGTGGCGATTGCAGGTGATCTGAATAGCACTCCACAGAGTGCAATCTAT 991
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GGAAATATTCCAGTGGCGATTGCAGGTGATCTGAATAGCACTCCACAGAGTGCAATCTAT 882
Query 992 GATTTCATAGCTTCAGCTGATTTGGATACACAACTTCACGATCGCAGGCAAATTTCTGGC 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 GATTTCATAGCTTCAGCTGATTTGGATACACAACTTCACGATCGCAGGCAAATTTCTGGC 942
Query 1052 CAGACTGAAGTGGAACCAAAGGAGAGGTCATTCAGAAACCATTATGCATTTAGTGCTTCA 1111
||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 943 CAGGGTGAAGTGGAACCAAAGGAGAGGTCATTTAGAAACCATTATGCAGTTAGTGCTTCT 1002
Query 1112 GCATCCATCTCCGGATCACTACTCAATGAGTGGAGCCAGGAAGAATTACAGCTTGCAACT 1171
| |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||||
Sbjct 1003 GTATCCATCTCCGGATCACTACCCAATGAATGGAGCCAAGAAGAACTACAGCTTGCAACT 1062
Query 1172 GGTGGTCAAGAAACCACTCATGTCCAACATCAACTGAAGCTTAACAGCGCATATAGTGGA 1231
|||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1063 GGTGGTCAAGCAACCACTCATGTCCAACATCAACTGAAGCTTCATAGCGCATATAGTGGA 1122
Query 1232 GTTCCTGGTACATATAGAACTAGAGATCAACGCGGTGAACCATTGGCAACAACGTATCAT 1291
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1123 GTTCCTGGTACATATAGAACAAGAGATCAACGCGGTGAACCATTGGCAACAACGTATCAT 1182
Query 1292 TCCAGGTTCCTTGGAACTGTTGATTATATATGGCATACCAAGGAACTCGTTCCTGTGAGG 1351
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1183 TCCAGGTTTCTAGGAACTGTTGATTATATATGGCACACCAAGGAACTCGTTCCTGTGAGG 1242
Query 1352 GTTCTTGAGACCTTGCCAGCAGATGTATTGAGAAGAACAGGTGGACTACCTAGTGAGAAT 1411
|||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GTTCTTGAAACCTTGCCAACTGATGTATTGAGAAGAACAGGTGGACTACCTAGTGAGAAA 1302
Query 1412 TGGGGAAGCGACCATCTCGCTATCGCATGTGAACTCGGCTTTGTCAATGAC 1462
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1303 TGGGGAAGCGATCATCTCGCTATCGCATGTGAACTCGGCTTTGTCAATGAC 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68333899530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5