BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73880.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926767 jgi|Araly1|926767|scaffold_202328.1 2215 0.0
> Ahg926767 jgi|Araly1|926767|scaffold_202328.1
Length=1464
Score = 2215 bits (1199), Expect = 0.0
Identities = 1367/1448 (94%), Gaps = 12/1448 (1%)
Strand=Plus/Plus
Query 146 CACTAGAAAA-GCTCATTATGAAAGTG-AACGAGGAAAACAACAAGCCGACAAAGACCCA 203
||||| |||| |||||||| || || | |||||||||||||||||||||||||| |||||
Sbjct 4 CACTA-AAAATGCTCATTACGACAG-GAAACGAGGAAAACAACAAGCCGACAAAAACCCA 61
Query 204 TGTCTTAATCTTCCCATTTCCGGCGCAAGGTCACATGATTCCCCTCCTCGACTTCACCCA 263
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 62 TGTCTTAATCTTCCCGTTTCCGGCGCAAGGCCACATGATTCCCCTCCTCGACTTCACCCA 121
Query 264 CCGCCTTGCTCTCCGCGGCGGCGCCGCCTTAAAAATAACCGTCCTAGTCACTCCAAAAAA 323
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 122 CCGCCTTGCTCTCCGCGGCGCCGCCGCCTTAACCATAACCGTCTTAGTCACTCCAAAAAA 181
Query 324 CCTTCCTTTTCTCTCTCCGCTTCTCTCCGCCGT-AGTTAACATCGAACCACTTATCCTCC 382
|||||||||||||||||| |||||||||||||| || |||||||||| ||||||||||||
Sbjct 182 CCTTCCTTTTCTCTCTCCACTTCTCTCCGCCGTAAG-TAACATCGAAACACTTATCCTCC 240
Query 383 CTTTTCCCTCCCACCCTTCAATCCCCTCCGGCGTCGAAAACGTCCAAGACTTACCTCCTT 442
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 CTTTTCCCTCTCACCCTTCAATCCCCTCCGGCGTCGAAAACGTTCAAGACTTACCTCCTT 300
Query 443 CAGGCTTCCCTTTAATGATCCACGCGCTTGGTAATCTCCACGCGCCGCTTATCTCTTGGA 502
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CAGGCTTCCCTTTAATGATCCACGCGCTTGGTAATCTCCACGCGCCGCTTCTCTCTTGGA 360
Query 503 TTACTTCTCACCCTTCTCCTCCAGTAGCCATCGTATCTGATTTCTTCCTTGGTTGGACCA 562
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TTACTTCTCACCCTTCTCCTCCAGTAGCCATCGTCTCTGATTTCTTCCTTGGTTGGACCA 420
Query 563 AAAACCTCGGAATCCCTCGTTTCGATTTCTCTCCCTCCGCTGCTATCACTTGCTGCATAC 622
| ||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct 421 ATAACCTCGGAATCCCTCGTTTCGACTTCTCTCCTTCAGCTGCTATCACTTGCTGCATCC 480
Query 623 TCAATACTCTCTGGATCGAAATGCCCACCAAGATCAACGAAGATGACGATAACGAGATCC 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCAATACTCTCTGGATCGAAATGCCCACCAAGATCAACGAAGATGACGATAACGAGATCC 540
Query 683 TCCACTTTCCCAAGATCCCGAATTGTCCAAAATACCGTTTTGATCAGATCTCCTCTCTTT 742
|||| |||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 541 TCCAGTTTCCCAAGATCCCGAATTGTCCAAAGTACCCTTTTAATCAGATCTCCTCTCTTT 600
Query 743 ACAGAAGTTACGTTCACGGAGATCCAGCTTGGGAGTTCATAAGAGACTCCTTTAGAGATA 802
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 ACAGAAGTTACGTTCACGGAGATCCAGCTTGGGAGTTCATAAGAGACTCGTTTAGAGATA 660
Query 803 ACGTGGCGAGTTGGGGACTCGTCGTGAACTCGTTCACCGCCATGGAAGGTGTTTATCTCG 862
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 ACGCGGCGAGTTGGGGACTCGTCGTGAACTCGATCACCGCCATGGAAGGTGTTTATCTCG 720
Query 863 AACATCTTAAGCGAGAGATGGGCCATGATCGTGTATGGGCTGTAGGCCCAATTATTCCGT 922
| ||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||||
Sbjct 721 AGCATCTTAAGCGAGAGATGGGCCATGATTGTGTATGGGCCGTTGGCCCAATTCTTCCGT 780
Query 923 TATCTGG-GGATAACCGTGGTGGCCCGACTTCTGTTTCTGTTGATCACGTGATGTCGTGG 981
|||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 TATCTGATGG-TAACCGTGGTGGCCCGACTTCTGTTTCTGTTGATCACGTGATGTCATGG 839
Query 982 CTTGACGCACGTGAGGATAACCACGTGGTGTACGTGTGCTTTGGAAGTCAAG-TAGTTTT 1040
|||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||
Sbjct 840 CTTGACGCACGTGAGGATGACCACGTGGTGTACGTGTGCTTCGGAAGTCAAGCT-GTTTT 898
Query 1041 GACTAAAGAGCAGACTCTTGCACTCGCCTCTGGGCTTGAGAAAAGCGGCGTCCATTTCAT 1100
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 899 GACTAAAGAGCAGACTCTTGCGCTTGCCTCTGGGCTTGAGAAAAGCGGCGTCCATTTCAT 958
Query 1101 ATGGGCCGTAAAGGAGCCCGTTGA-GAAAGACTCAACACGTGGCAACATCCTGGACGGTT 1159
|||||||||||| ||||| ||||| | | || || |||||||||||||| | ||||| |
Sbjct 959 ATGGGCCGTAAAAGAGCCGGTTGACGGA-GAGTCGCCACGTGGCAACATCTTAGACGGCT 1017
Query 1160 TCGACGATCGCGTGGCTGGGAGAGGTCTGGTGATCAGAGGATGGGCTCCACAAGTAGCTG 1219
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1018 TCGACGATCGTGTGGCTGGAAGAGGTCTGGTGATCAGAGGATGGGCTCCGCAAGTGGCTG 1077
Query 1220 TGCTACGTCACCGAGCCGTTGGCGCGTTTTTAACGCACTGTGGTTGGAACTCTGTGGTGG 1279
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1078 TGCTACATCACCGAGCCGTTGGCGCGTTTTTAACGCACTGTGGTTGGAACTCTGTGATTG 1137
Query 1280 AGGCGGTTGTCGCCGGCGTTTTGATGCTGACGTGGCCGATGAGAGCTGACCAGTACACTG 1339
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1138 AGGCGGTTGTTGCCGGCGTTTTGATGCTGACGTGGCCGATGAGAGCTGACCAGTACACAG 1197
Query 1340 ACGCGTCTCTGGTGGTTGATGAGTTGAAAGTAGGTGTGCGTGCTTGCGAAGGACCTGACA 1399
||||||| |||||||| || ||||||||||| || |||||||||||||||||||||||||
Sbjct 1198 ACGCGTCGCTGGTGGTCGACGAGTTGAAAGTTGGCGTGCGTGCTTGCGAAGGACCTGACA 1257
Query 1400 CGGTGCCTGACCCGGACGAGTTAGCTCGAGTTTTCGCTGATTCCGTGACCGGAAATCAAA 1459
||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1258 CGGTGCCTGACCCGGACAAGTTAGCCCGAGTTTTCGCTGATTCTGTGACCGGAAAGCAAA 1317
Query 1460 CGGAGAGGATCAAAGCCGTGGAGCTGAGGAAAGCAGCGTTGGATGCGATTCAAGAACGTG 1519
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1318 CGGAGAGGATCAAAGCCGTGGAGCTGAGGAAAGCAGCATTGGATGCGATTCAAGAACGTG 1377
Query 1520 GGAGCTCAGTGAATGATTTAGATGGATTTATCCAACATGTCGTTAGTTTAGGACTAAACA 1579
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GGAGCTCCGTTAAGGATTTAGATGGATTTATCCAACATGTCGTTAGTTTAGGACTAAACA 1437
Query 1580 AATGATTT 1587
||||||||
Sbjct 1438 AATGATTT 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5