BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G73885.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg339588 jgi|Araly1|339588|fgenesh1_pg.C_scaffold_2001687           628    1e-179


> Ahg339588 jgi|Araly1|339588|fgenesh1_pg.C_scaffold_2001687
Length=639

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 386/409 (94%), Gaps = 0/409 (0%)
 Strand=Plus/Plus

Query  124  GAACAGCAGGAAGAGGGAAACGAAGGTTTTGACGGCGAGAACCCGCCGTCTCAGATCGTT  183
            ||||||| ||||||||||||||  || |  |||||||| |||||||||||||||||||  
Sbjct  220  GAACAGCCGGAAGAGGGAAACGGTGGGTACGACGGCGAAAACCCGCCGTCTCAGATCGAA  279

Query  184  ATCAACGACGAAGATGGAGATAGAACGGTGGTGAATACTCGATTCAGAGGTGATCCGAAA  243
            ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  280  ATCAAAGACGAAGATGGAGATAGAACGGTGGTGAATACTCGTTTCAGAGGTGATCCAAAA  339

Query  244  GATGCGCCGAAATTTGCCATTAAGGATCTTCCTGGACTTGAACCAGATCCTTTTGAAGGT  303
            || |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct  340  GACGCGCCGAAATTTGCGATTAAGGATCTTCCAGGGCTTGAACCAGATCCTTTTGAAGGT  399

Query  304  GAGAAGTGGGATGGTCTAGGTTTCTTCGTTCAGTACTTGTGGGCTTTCGGAATCCTTTTC  363
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  400  GAGAAGTGGGATGGTCTAGGGTTCTTCGTTCAGTACTTGTGGGCTTTCGGAATCCTTTTC  459

Query  364  GCGCTAATCTCTGGTGGACTTGCGGCGGGGACGTATAACGAAGGTGCGACGGATTTCAAG  423
            ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  460  GCGCTAATCTCCGGAGGACTTGCGGCGGGGACTTATAACGAAGGTGCGACGGATTTCAAG  519

Query  424  GAGACGCCAGTATATAAAGAGGCGATTCAATCTCGTGACCTTCTTGATGAAGCAGAGAGT  483
            ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  520  GAGACGCCAGTGTATAAAGAGGCGATTCAATCACGTGACCTTCTTGATGAAGCAGAGAGT  579

Query  484  TCAAACTCTGAAGATGTGTTTGAGTCCAACCCAACAGAAGTGGCTCCTA  532
            |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  580  TCAAACTCTGAAGATGTGTTTGAGTCCAACCCAACAGAAGTGGCGCCTA  628


 Score =  195 bits (105),  Expect = 4e-49
 Identities = 117/123 (95%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTCTCACCGTGAGCAGCGGTGGCGGAGGAGCTAGAATCCGCTGCAACGACCTCACC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  1    ATGGCTCTCACCGTGAGCAGCGGTGGCGGAGGAGCTAGAATCCGCTGCAACGATCTCACT  60

Query  61   GATTCTTCTCGTAACCCTTTCTCCACCTTCCGACTCGTAAACTTCCCTAATCCATCAAGA  120
            |||||||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||
Sbjct  61   GATTCTTCTCGTAATCCTTTCTCCACCTTCCGACTCGTAAACTTCCCTTCTCCGTCAAGA  120

Query  121  ACC  123
            |||
Sbjct  121  ACC  123



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5