BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73890.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339589 jgi|Araly1|339589|fgenesh1_pg.C_scaffold_2001688 845 0.0
> Ahg339589 jgi|Araly1|339589|fgenesh1_pg.C_scaffold_2001688
Length=591
Score = 845 bits (457), Expect = 0.0
Identities = 549/592 (93%), Gaps = 11/592 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTACTCTTC-TCATCACTCTTTTAATCTCCTTATCAGCATTCTTTCTCCG 59
|||||||||||||||| || | || | ||| |||||||| || ||| ||||||||||||
Sbjct 1 ATGGCTTCTTCTACTC-TCTTTATTATTCTCTTAATCTCATTGTCACCATTCTTTCTCCC 59
Query 60 AATGGTTCTCGCTCAAGTACCAGCTACATGTGCCTCCAGACTGCTTTCCTTAGCTCCATG 119
| | ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 60 ACTAGTTCTCGCTCAAGTACCAGCTACATGTGCCTCCAGACTGCTTTCCCTGGCTCCATG 119
Query 120 TGGTCCATTCGTTCAAGGCTTTGCCCAACTTCCGGCTCAGCCATGTTGTGACAGCTTAAA 179
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 120 TGGTCCATTCGTTCAAGGCTTTGCCCAGCTTCCGGCTCAGCCATGCTGTGACAGCTTAAA 179
Query 180 CCAGATCTATAGCCAAGAAGCAACCTGTCTCTGTCTCTTCCTCAACAACACCTCTACTTT 239
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 180 CCAGATCTATAGCCAAGAAGCAACTTGTCTCTGTCTCTTCCTCAACAACACTTCTACTTT 239
Query 240 GTCCCCTGCTTTTCCAATTAATCAAACTCTTGCTCTACAATTGCCTCCGCTTTGCAACAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCCCCTGCTTTTCCAATTAATCAAACTCTTGCTCTACAATTGCCTCCGCTTTGCAACAT 299
Query 300 TCCAGCCAATTCATCCACTTGCTCCTCC--T-CCTTC-CCT--GGAG-AG-G-CGCCTAG 350
|||||| ||||||||| ||||||||||| | ||| | || |||| || | |||||||
Sbjct 300 TCCAGCTAATTCATCCTCTTGCTCCTCCGCTTCCTCCGCCCCAGGAGGAGAGGCGCCTAG 359
Query 351 TGATTCCTCCTCTGTTGCTCCACCACCTTCAAGCTCAACTGGTTCTCAAATCTCTCAAGG 410
|||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |||
Sbjct 360 TGATTCCTCCTCTGTTGCTCCACCACCTTCTAGCTCAACTAGTCCTCAAATCTCTCTAGG 419
Query 411 TGCAAAGAACAACTCTCGTGTCGCTGCTACTCCAGTGGCTCAAATGGCACCAAGACCCAC 470
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 420 TGCAAAGAACAACTCTCGTGTCGCGGCTACTCCGGTGGCTCAAATGGCACCAAGACCCAC 479
Query 471 CAGTTTTATGGGATTAGGTTATGGTTTGAAATCCTCTGGCTCCAAGTCTGAGATTCAGCT 530
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 480 CAGTTTTATGGGATTAGGTTATGGTGTGAGATCCTCTGGCTCCAAGTCTGAGATTAAGCT 539
Query 531 AACCATCTTTGCACTCGCAGCGATCTTACCCGCCGCTCTCCTCCTCATCTGA 582
||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 540 AACCATCCTTGCACTCGCAGCGATCCTACCCGCCACTCTCCTCCTCATCTGA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5