BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73920.1
Length=2650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476529 jgi|Araly1|476529|fgenesh2_kg.2__1659__AT1G73920.1 3740 0.0
Ahg472064 jgi|Araly1|472064|fgenesh2_kg.1__2018__AT1G18460.1 1652 0.0
> Ahg476529 jgi|Araly1|476529|fgenesh2_kg.2__1659__AT1G73920.1
Length=2471
Score = 3740 bits (2025), Expect = 0.0
Identities = 2238/2340 (96%), Gaps = 17/2340 (1%)
Strand=Plus/Plus
Query 284 aaaaaacaaaaaaaTCTGATTTTTGAGAAAAAAG-CAATGCAACGGATCGTGGACAACGC 342
|||||| ||||| ||||||||||||| | |||| | |||||||||||||| ||||||||
Sbjct 139 AAAAAA-AAAAAGGTCTGATTTTTGAG-ATAAAGTC-ATGCAACGGATCGTAGACAACGC 195
Query 343 TCTCGCTGTAACCAAAGAATCAGTAAAAACTGTTACATATGAGTCTTTGAATAACATTGC 402
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 196 TCTCGCTGTAACCAAAGAATCAGTGAAAACTGTTACATATGAGTCTTTGAACAACATTGC 255
Query 403 GAGGTGCATAAATGGAGTATCAGCTCTTCTGTTGACCCTTCTCCCAGGGAAGGCTAATAT 462
|| |||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 256 AAGATGCATAAATGGAGTATCAGCTCTTCTGTTGACTCTTCTACCGGGGAAAGCTAATAT 315
Query 463 TCTTGAAGGCT-TACATGGCTGGGAACTCAGGCCTACGTTTCGTGGACCACGTTTACCAC 521
||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 316 TCTTGAAGG-TCTCCATGGCTGGGAACTCAGGCCCACGTTTCGTGGACCACGTTTACCAC 374
Query 522 GGTGGATGCATAATGGGGTCTCTTCTTTCAATGAGTTCATTCATGAGCTTTCTGTTGATT 581
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 375 GGTGGATGCATAATGGGGTCTCTTCTTTCAACGAGTTCATTCATGAGCTTTCTGTGGATT 434
Query 582 CTGATACTTCAAGCTTGGAGTATTCTTCTGGAGAAGATAGTGATGGTCCTTTGCCTCCAT 641
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 435 CTGATACTTCAAGCTTGGAGTATTCTTCTGGAGAAGATAGTGATGGTCCGATGCCTCCAT 494
Query 642 CACCATCATCTCAAAGCTCACGCCTCTCTTGGGCTAGCACTTCTGCAAGTTCTGAAAACC 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CACCATCATCTCAAAGCTCACGCCTCTCTTGGGCTAGCACTTCTGCAAGTTCTGAAAACC 554
Query 702 ACTGGACAGAGTGGATTACGTTCATTCTTTGGTGGTTAATGTTTCCTGTACGGATCTTGC 761
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 555 ACTGGACAGAGTGGATTACGTTCATTCTTTGGTGGTTAATATTTCCTCTACGGATCTTGC 614
Query 762 TATGGATACCACAATATATTATAAGTTTATT-CTATAAACGAAGTTCAAGAATTCCTGCG 820
|||||||||| ||||||||||| |||||||| || ||||||||||||| || |||||||
Sbjct 615 TATGGATACCGCAATATATTATGAGTTTATTCCT-TAAACGAAGTTCACCAACTCCTGCG 673
Query 821 AGCCCGAGAAGGCACCAACATTCATCTAGACCTCGTATTAGCAAGACCAACTCAAGCAAA 880
||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||
Sbjct 674 AGCCCGAGAAGGCACCAACATTCATCTAGACATCGTATTAGTAAGACCAATTCAAGCAAA 733
Query 881 GACCATGATGTTCCCAACCGAACTACTGATAGAAGACGTGGGGTTATTGAGGATCTTCAT 940
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 734 GACCATGATGTTCCCAACCGAACTACTGATAGAAGACGCGGAGTGATTGAGGATCTTCAT 793
Query 941 CTTGCTATCGAGATCGGCATAGAAGCAATATTTGAtttttttCACAAGGCTACGCATCTT 1000
|||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 794 CTTGCTATCGAGATCGCCATAGAAGCAATATTTGATTTTTTTCACAAGACTACACATCTT 853
Query 1001 CTTCTTTCTCCATCAGAAGCTTTTGCAATATTGTTATCATGGTTCTCATCTTCCAGTCGC 1060
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 854 CTTCTTTCTCCATCAGAAGCTTTTGCAATACTGTTATCATGGTTCTCATCTTCCAGTCAC 913
Query 1061 AGCCCTAAAGAAAACCATGGTGAGGTTGCTTATGATGAAACTGTGCAGACTGCTACTTTA 1120
||||||||||||||||||||||| ||| | |||||| ||||||||| ||||||||||||
Sbjct 914 AGCCCTAAAGAAAACCATGGTGACGTTACAGATGATGGAACTGTGCAAACTGCTACTTTA 973
Query 1121 GGAGATACAGATCCATCCCCCACGGAAAGGCCCGTTGAAAGTCCCACACGTTTATACAAC 1180
|||||||| |||||||||||||||||||||||| | ||||| |||||||| |||||||||
Sbjct 974 GGAGATACTGATCCATCCCCCACGGAAAGGCCCATAGAAAGGCCCACACGCTTATACAAC 1033
Query 1181 TCTATGAACACTGATACTCGAACGTGTCAAGATGTCATAACAGAGTTGGGGTATCCTTAC 1240
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1034 TCTATGAACACAGATACTCGAACGTGTCAAGATGTCATAACAGAGCTGGGGTATCCTTAC 1093
Query 1241 GAAGCTATTCGTGTTATTACATCTGACGGATATGTTCTTGTCTTGGAAAGGATACCAAGA 1300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 GAAGCTATTCGTGTTGTTACATCTGACGGATATGTTCTTGTCTTGGAAAGGATACCAAGA 1153
Query 1301 CGTGATGCAAGGAAAGCTGtttttttGCAGCATGGGGTTTTGGATTCTTCAATGGGATGG 1360
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1154 CGTGATGCTAGGAAAGCTGTTTTTTTGCAGCATGGGGTTTTGGATTCATCTATGGGATGG 1213
Query 1361 GTATCTAATGGGGTTGTTGGATCTCCGGCTTTTGCTGCGTATGACCAAGGCTATGATGTT 1420
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1214 GTCTCTAATGGGGTTGTTGGATCTCCGGCTTTTGCTGCGTATGACCAAGGCTACGATGTT 1273
Query 1421 TTTCTGGGTAACTTTCGGGGTTTAGTTTCAAGAGATCATGTGAACAAGAACATATCCTCA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TTTCTGGGTAACTTTCGGGGTTTAGTTTCAAGAGATCATGTGAACAAGAACATATCCTCA 1333
Query 1481 AAAGAGTTCTGGCGATACTCCATTAACGAGCACGGTACTGAAGATATCCCAGCGATGATA 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 AAAGAGTTCTGGCGATACTCCATTAACGAGCACGGTACTGAAGATATCCCAGCGATGATA 1393
Query 1541 GAAAAAATTCATGAAATAAAAACTACAGAACTCAAGCTCTGCCAGCCCAATATC---GAT 1597
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1394 GAAAAAATTCATGAAATAAAAACTACAGAACTCAAGCTCTACCAGCCCAATATCGATGAT 1453
Query 1598 GAAGAAATCAACCAGGAGGAGCCTTATAAGCTCTGTGCCATCTGTCACAGTCTAGGCGGT 1657
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1454 GAAGAAAGCAACCAGGAGGAGCCTTATAAGCTCTGTGCCATCTGTCATAGTCTAGGCGGT 1513
Query 1658 GCTGCAATTCTGATGTATGTTATTACTCGAAAAATCAAGGAGAAGCCACACAGACTCTCA 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 GCTGCAATTCTGATGTATGTTATTACTCGAAAAATCAAGGAGAAGCCACACAGACTCTCA 1573
Query 1718 CGACTAATCCTACTTTCACCTGCTGGGTTTCATGAGGACTCGAACTTAGGTTTCACAATA 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 CGACTAATCCTACTTTCACCTGCTGGGTTTCATGAGGACTCGAACTTAGGTTTCACAATA 1633
Query 1778 GTTGAGTACATATTCCTTTTCATTAGTCCAGTTTTGGCTCGCATCGTGCCTGCCTTCTAC 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 GTTGAGTACATATTCCTTTTCATTAGTCCAGTTTTGGCTCGCATCGTGCCTGCCTTCTAC 1693
Query 1838 ATACCGACAAGATTCTTCAGAATGCTTCTGAACAAGTTAGCCCGTGACTTTCACAACTAT 1897
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1694 ATACCGACAAGATTCTTCAGGATGCTTCTGAACAAGTTAGCTCGTGACTTTCACAACTAT 1753
Query 1898 CCTGCTCTTGGTGGATTGGTCCAAACTCTAATGAGTTATGTAGTTGGTGGAGACAGCTCG 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 CCTGCTCTTGGTGGATTGGTCCAAACTCTAATGAGTTATGTAGTTGGTGGAGACAGCTCG 1813
Query 1958 AATTGGGTCGGAGTCTTAGGATTGCCTCACTACAACATGAACGACATGCCAGCTGTCTCC 2017
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1814 AATTGGGTCGGAGTCCTAGGATTACCTCACTACAACATGAACGACATGCCAGCTGTCTCC 1873
Query 2018 TTCCGTGTGGCGCAACATCTTGCTCAGATCAAACACACCGGTAAATTCAGGATGTATGAT 2077
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1874 TTTCGTGTGGCGCAACATCTTGCTCAGATCAAACACAGCGGTAAATTCAGGATGTATGAT 1933
Query 2078 TATGGAAGCAGATCAGCTAACATGGAGGTTTATGGCTCTCCTGAACCGCTTGATCTAGGG 2137
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1934 TATGGAAGCAGATCATCTAACATGGAGGTTTATGGCTCTCCTGAACCCCTTGATCTAGGG 1993
Query 2138 GAGTCTTACAAGTTCATCGATGTGCCTGTGGATTTAGTAGCGGGAAGGAACGACAAGGTG 2197
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1994 GAGTCCTACAAGTTCATCGATGTGCCTGTGGATTTAGTAGCGGGAAGGAATGACAAGGTG 2053
Query 2198 ATCCGTTCCTCTATGGTGAAGAAACACTACAATGTGATGAGAGATGCCGAGGTCGATGTA 2257
|| || || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2054 ATTCGGTCTTCCATGGTGAAGAAACACTACAATGTGATGAGAGATGCCGAGGTCGATGTA 2113
Query 2258 TCGTTTAATGAGTTTGAGTATGCTCACCTTGATTTCACATTCTCTCACCGTGAAGAGCTT 2317
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2114 TCGTTTAATGAGTTTGAGTATGCTCACCTTGATTTCACATTCTCCCACCGCGAAGAGCTT 2173
Query 2318 TTGAGATATGTGATGTCGCGGCTTCTGCTTGTGAAACAGACACCAGTTCAACAGAGGCAG 2377
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2174 TTGAGATATGTAATGTCGCGGCTTCTACTTGTGAAACAGACACCAGTTCAACAGAGGCAG 2233
Query 2378 ACCAGTCAGAAAGGTATGAAGTTGAAGAAGAAGAAAAAGGAGGGTACAGTAGTGTAGTAG 2437
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2234 ACCAGTCAGAAAGGTATGAAGTTGAAGAAGAAGAAAAAGGAGG-TACAGTAGTGTAGTAG 2292
Query 2438 CTGAAACCGATCTATGGCCAATGTTCAATGCCTCGTAGAGTTTGGTGTCTTTGTATTGTG 2497
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 2293 CTGAAACCGATCTATGGA-AATGTTCAATGCCTCATAGAGTTTGGTGTCTTTGTATTGTG 2351
Query 2498 ATGTTGTGTGTAAGCTTCATGTGTGTGTTCTATGCCAGTATCCTATGGCTTGGCTATAA- 2556
||||| ||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 2352 ATGTTATGTGTGAGCTTCATGTGTGTGTTCTATCCCAATATCCTATGGGTTGGCTATAAA 2411
Query 2557 TA---GTGTACATATACCGTAAAGATTGATCCCTTGATGAAATGATCTTGTTGTGAGAGA 2613
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2412 TAATAGTGTACATATAATGTAAAGATTGATCCCTTGATGAAATGATCTTGTTGTGAGAGA 2471
Score = 172 bits (93), Expect = 9e-42
Identities = 112/121 (93%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 106 TAAATCTCGATCGCGATTTGGTCCAATATCTCCTAGCATCGAGAGATTTCTATTCTGGCT 165
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| ||
Sbjct 1 TAAATCTCGATCGCGATTTGGT-CAATTTCTCCAAGCATCGAGAGATTTCTATTCTCGCA 59
Query 166 AAATTTTGTGTTTTCTCAGGTGGATAAGAAATTTTCTCTTTGTCGTTTTCCTCGATAATT 225
||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 60 AAATTTTGTGTTTTCTCAGGTGGATAAGAG-TTTTCTCTTTGTCGTTTTCCTGGAAAATT 118
Query 226 T 226
|
Sbjct 119 T 119
> Ahg472064 jgi|Araly1|472064|fgenesh2_kg.1__2018__AT1G18460.1
Length=2377
Score = 1652 bits (894), Expect = 0.0
Identities = 1700/2080 (82%), Gaps = 91/2080 (4%)
Strand=Plus/Plus
Query 313 AAAAGCAATGCA-ACGGATCGTGGACAACGCTCTCGCTGTAACCAAAGAATCAGTAAAAA 371
|||| | ||||| | ||||||| || || ||||| ||||| || ||||| ||||| ||||
Sbjct 155 AAAATC-ATGCAGA-GGATCGTCGATAATGCTCTTGCTGTCACAAAAGAGTCAGTGAAAA 212
Query 372 CTGTT-ACATATGAGTCTTTGAATAACATTGCGAGGTGCATAAATGGAGTATCAGCTCTT 430
|| || || |||||||||||||| ||| |||| || ||||| |||||| | || || |||
Sbjct 213 CT-TTGACTTATGAGTCTTTGAACAACTTTGCAAGATGCATTAATGGATTTTCTGCGCTT 271
Query 431 CTGTTGACCCTTCT-CCCAGGGAAGGCTAATATTCTTGAAGG-CTTACATGGCTGGGAAC 488
|| ||||| ||| | ||| || ||| | ||| |||||||||| ||| ||||| ||||| |
Sbjct 272 CTCTTGACACTTTTGCCC-GGAAAGTCCAATGTTCTTGAAGGTCTT-CATGGATGGGAGC 329
Query 489 TCAGGCCTACGTTTCGTGGACCACGTTTACCACGGTGGATGCATAATGGGGTCTCTTCTT 548
||||||| || || |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 330 TCAGGCCGACATTGCGTGGACCTCGTTTACCACGGTGGATGCATAATGGAGTCTCTTCTT 389
Query 549 TCAATGAGTTCATTCATGAGCTTTCTGTTGATTCTGATACTTCAAGCTTGGAGTATTCTT 608
|||| | |||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |
Sbjct 390 TCAACCACTTCATTCACGAGCTCTCTGTGGATTCTGATACTTCAAGCTTGGACTATTCCT 449
Query 609 CTGGAG-A-A-GATAGTGATGG--TC-CTTTGCCTCCATCACCATCATCTCAAAGCTCAC 662
|||||| | | ||||||||||| || | |||||||||||| | |||||||||||||
Sbjct 450 CTGGAGAAGATGATAGTGATGGCATCTCCACGCCTCCATCACCCTTGTCTCAAAGCTCAC 509
Query 663 GCCTCTCTTGGGCTAGCACTT-CTGCAAGTT-CTGAAAACCACTGGACAGAGTGGATTAC 720
|| |||||||||||| ||| |||||| || | |||| ||| |||||||||||||| ||
Sbjct 510 TCCGCTCTTGGGCTAG-TCTTCCTGCAAATTAC-GAAAGCCATTGGACAGAGTGGATAAC 567
Query 721 GTTCATTCTTTGGT-GGTTAATGTTTCCTGTACGGAT-CTTGCTATGGATACCACAATAT 778
|||||| | |||| |||| | | |||| ||||| ||| |||||| ||||| ||||
Sbjct 568 CTTCATTGTCTGGTGGGTT-TTACTACCTGCCCGGATCCTT-CTATGGTTACCATTATAT 625
Query 779 ATTATAAGT-TTATTCTATAAACGAAGTTCAAGAAT-T--CCTGCGAGCCCGA-GAAGGC 833
|| || || || || || ||||| ||||||||| | ||| |||||| | |||||
Sbjct 626 CTTTTACGTCTT-TTAGGTAGACGAAATTCAAGAATGTCACCTATGAGCCC-AGGAAGGT 683
Query 834 ACCAACATTCATCTAGACCTCGTATTAGC-AAGACCAACTCAAGCAAAGACCATGATGTT 892
|||||||||| ||||||||| | ||||| ||| | | | || | ||||| ||||| | |
Sbjct 684 ACCAACATTCGTCTAGACCTTATTTTAGCAAAG-CTATCCCAGGGAAAGAGCATGACG-T 741
Query 893 CCC-AACCGAACTACTGATAGAAGACGTGGGGTTATTGAGGATCTTCATCTTGCTATCGA 951
||| |||||||||||||||| |||||| || || |||||||||||||| |||| ||||||
Sbjct 742 CCCTAACCGAACTACTGATAAAAGACGCGGAGTCATTGAGGATCTTCAGCTTGGTATCGA 801
Query 952 GATCGGCATAGAAGCAATATTTGAtttttttCACAAGGCTACGCATCTTCTTCTTTCTCC 1011
|||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 802 GATCTTTATAGAAACAATATTTGATTTTTTTCACAAGGCGGCACATCTTCTTCTTTCTCC 861
Query 1012 ATCAGAAGCTTTTGCAATA-TTGTTATCATGGTTCTCATCTTCCAGTCGCAGCCCTAAAG 1070
||||||| |||||| |||| || |||||||||||||| || ||||||| |||| ||||||
Sbjct 862 ATCAGAAACTTTTGGAATAGTT-TTATCATGGTTCTCTTCCTCCAGTCACAGCTCTAAAG 920
Query 1071 AAAACCATGGTGA-GGTTGCTTATGATGA-AACTGTGCAGACTGCTACTT-TAGGAGATA 1127
|||| |||| || | || | ||||||| | | ||||||||||| | || |||||||||
Sbjct 921 GAAACTATGGCGACGCTT-CGGATGATGAGATC-GTGCAGACTGCCA-TTCTAGGAGATA 977
Query 1128 CAGATCCATCCCCCACGGAAAGGCCCGTTGAAAGTCC-C-ACACGTTTATACAACTCTAT 1185
||| |||| || || |||| | | || || | ||| | |||||| | ||
Sbjct 978 GTGATTCATCTCCTACAGAAA-----GAAG-AA--CCACAACAAGCTTATAC-A----AT 1024
Query 1186 GAACACTGATACTCGAACGTGTCAAGATGTCATAACAGAGTTGGGGTATCCTTACGAAGC 1245
||| |||||||| || ||||||||||| ||||||||||| |||||||| || |||||
Sbjct 1025 --ACA--GATACTCGGACTTGTCAAGATGTTATAACAGAGTTTGGGTATCCGTATGAAGC 1080
Query 1246 TATTCGTGTTATTACATCTGACGGATATGTTCTTGTCTTGGAAAGGATACCAAGACGTGA 1305
|||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||| ||
Sbjct 1081 TATTCGTGTTGTTACATCTGATGGATATGGTCTTCTCTTGGAAAGGATACCAAGACGAGA 1140
Query 1306 TGCAAGGAAAGCTGtttttttGCAGCATGGGGTTTTGGATTCTTCAATGGGATGGGTATC 1365
||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 1141 TGCCAGGAAAGCTGTTTATTTGCAGCATGGTGTAATGGATTCTTCAATGGGATGGGTATC 1200
Query 1366 TAATGGGGTTGTTGGATCTCCGGCTTTTGCTGCGTATGACCAAGGCTATGATGTTTTTCT 1425
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1201 AAATGGTGTTGTTGGATCTCCGGCTTTTGCTGCTTATGATCAAGGCTATGATGTTTTCCT 1260
Query 1426 -GGGTAACTTTCGGGGTTTAGTTTCAAGAGATCATGTGAACAAGAACATATCCTCAAAAG 1484
||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1261 AGGG-AACTTTCGCGGTTTAGTTTCAAGAGATCATGTGAACAAAAACTTATCCTCAAAAG 1319
Query 1485 AGTTCTGGCGATACTCCATTAACGAGCACGGTACTGAAGATATCCCAGCGATGATAGAAA 1544
| |||||||| |||||||| || ||||| | || |||||||||||||| |||||||| |
Sbjct 1320 ATTTCTGGCGTTACTCCATCAATGAGCATGCAACAGAAGATATCCCAGCAATGATAGAGA 1379
Query 1545 AAATTCATGAAATAAAAACTACAGAACTCAAGCTCTGCCAGCCCAATATCGATGAAGAAA 1604
| ||||| ||||| |||||| ||||||| || || | ||||| | ||| || || | |
Sbjct 1380 AGATTCACGAAATCAAAACTTCAGAACTGAAACTTTATCAGCCTACTATGGAAGAGGTAG 1439
Query 1605 TCAACCAGGAGGAGCCTTATAAGCTCTGTGCCATCTGTCACAGTCTAGGCGGTGCTGCAA 1664
| ||| ||||| | || ||||||||||||| | | ||||||| ||||||| || |||
Sbjct 1440 TAAACGAGGAGCAACCATATAAGCTCTGTGTTGTATCTCACAGTTTAGGCGGCGCCGCAG 1499
Query 1665 TTCTGATGTATGTTATTACTCGAAAAATC-AAGGAGAAGCCACACAGACTCTC-ACGACT 1722
||||||||||||| || || || |||||| ||| |||| || ||||||||||| | ||||
Sbjct 1500 TTCTGATGTATGTAATCACCCGTAAAATCGAAG-AGAAACCGCACAGACTCTCGA-GACT 1557
Query 1723 AATCCTACTTTCACCTGCTGGGTTTCATGAGGACTCGAACTTAG-GTTTCACAATAGTTG 1781
|| | ||||| |||||||||||||| || ||||| ||| | | |||||||| | | ||
Sbjct 1558 GGTCTTGCTTTCGCCTGCTGGGTTTCACGATGACTCCAACAT-GTGTTTCACATT-GATG 1615
Query 1782 -AGTACATATTCCTTTTCATTAG-TCCAGTTTTGGCTCGCATCGTGCCTGCCTTCTACAT 1839
|||||| ||||||| || || | ||| || | |||| || || ||||| ||||||||
Sbjct 1616 GAGTACACATTCCTTCTC-TTGGGTCCTGTACTATCTCGGATTGTTCCTGCTTTCTACAT 1674
Query 1840 ACCGAC-AAGATTCTTCAGAATGCTTCTGAACAAGTTAGCCCGTGACTTTC-ACAACTAT 1897
|| || || ||||||||| |||||||| ||||||||||| || || |||| | ||||||
Sbjct 1675 CCCCACTAA-ATTCTTCAGGATGCTTCTCAACAAGTTAGCTCGAGA-TTTCCATAACTAT 1732
Query 1898 CCTGCTCTTGGTGGATTGGTCCAAAC-TCTAATGAGTTATGTAGTTGGTGGAGACAGCTC 1956
|||||| |||||||||| ||||| || | | ||||||||||||||||| ||||| |||||
Sbjct 1733 CCTGCTGTTGGTGGATTAGTCCAGACAT-TGATGAGTTATGTAGTTGGCGGAGATAGCTC 1791
Query 1957 GAATTGGGTCGGAGTCTTAGGATTGCCTCACTACAACATGAACGACATGCCAGCTGTCTC 2016
|| ||||| |||||| | |||||||||||||| ||||||||||| ||||||| | | ||
Sbjct 1792 AAACTGGGTTGGAGTCATGGGATTGCCTCACTATAACATGAACGATATGCCAGGTATATC 1851
Query 2017 CTTCCGTGTGGCGCAACATCTTGCTCAGATCAAACACACCGGTAAATTCAGGATGTATGA 2076
|||||||||||| || |||||||| ||||| ||||| | |||||| |||| ||||| |||
Sbjct 1852 CTTCCGTGTGGCTCAGCATCTTGCGCAGATTAAACATAGCGGTAAGTTCAAGATGTTTGA 1911
Query 2077 TTATGGAAGCAGATCAGCTAACATGGAGGTTTATGGCTCTCCTGAACCGCTTGATCTAGG 2136
||| || ||||| |||||||| ||||||||||| || |||||||| || || || || ||
Sbjct 1912 TTACGGTAGCAGTTCAGCTAATATGGAGGTTTACGGGTCTCCTGAGCCACTCGACCTTGG 1971
Query 2137 GGAGTCTTACAAGTTCATCGATGTGCCTGTGGATTTAGTAGCGGGAAGGAACGACAAGGT 2196
||||| |||| ||| |||||||||||||||||||||||||| |||| ||| || || ||
Sbjct 1972 GGAGTTTTACGGGTTAATCGATGTGCCTGTGGATTTAGTAGCCGGAAAGAAAGATAAAGT 2031
Query 2197 GATCCGTTCCT-CTATGGTGAAGAAACACTACAATGTGATGAGAGATGCCG-AGGTCGAT 2254
||| | ||| | ||||| | |||||| |||| |||||||||||| | | || | |||
Sbjct 2032 GATTAGA-CCTTCAATGGTTAGGAAACATTACAGGGTGATGAGAGATTCAGGAGTT-GAT 2089
Query 2255 GTATCGTTT-AATGAGTTTGAGTATGCTCACCTTG-ATTTCACATTCTCTCACCGTGAAG 2312
|| || || |||||||||||||||||||| ||| |||| || ||||||||||||||||
Sbjct 2090 GTTTC-TTACAATGAGTTTGAGTATGCTCAT-TTGGATTTTACCTTCTCTCACCGTGAAG 2147
Query 2313 AGCTTTTGA-GATATGTGATGTCGCGGCTT-CTGCTTGTG 2350
|||||||| | ||||||||||||||| || ||||| |||
Sbjct 2148 AGCTTTTGGCG-TATGTGATGTCGCGG-TTACTGCTCGTG 2185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99948802880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5