BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73930.1
Length=2546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476531 jgi|Araly1|476531|fgenesh2_kg.2__1661__AT1G73930.1 3578 0.0
> Ahg476531 jgi|Araly1|476531|fgenesh2_kg.2__1661__AT1G73930.1
Length=2430
Score = 3578 bits (1937), Expect = 0.0
Identities = 2164/2273 (95%), Gaps = 17/2273 (1%)
Strand=Plus/Plus
Query 245 TGATTTGATCTAACGTCTTGAGCTTACAAATTTTCTTTCTTTGGGATTCAATTTCAGGCT 304
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 TGATTTGATCTAACATTTTGAGCTTACAAATTTTCTTTCTTTGGGATTCAATTTCAGGCT 222
Query 305 GCGAAAGTGTTTCATGAAGCTAACCCACCAAATCTGAGC---TTAGTATAAGCTAAAGAT 361
||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 223 GCGAAAGTGTTTCGTGAAGCAAACCCACCAAATCTGAGCTTATTAGTATAAGCTAAAGAT 282
Query 362 TCAAACTTTGATGAAGCTTTTCAATTGGGGAAGTATAAGGGACGATGAGGTTTGATGGAT 421
|||| |||||||||| || ||||||| |||||||||||| | ||| | ||||||||| |
Sbjct 283 TCAAGCTTTGATGAATCTCCTCAATTGCGGAAGTATAAGGTATGAT-AAGTTTGATGGGT 341
Query 422 AGGAGAGTTTCTTGGTTACATTTGAAATGAGTCGGTCTCCATCGTTTTCTGTGAAGCCTG 481
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 342 ATGAGAGTTTCTTGGTTACATTTGAAATGAGTCGGTCTCCATCGTTTTCTGCGAAGCCTG 401
Query 482 AGCTAAGTATAAAGCCTGATCCTGAGTCATTGAAACGATGGATTCATGCATTTTGCATTA 541
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 402 AGCTTAGTATAAAGCCTGATCCTGAGTCTTTGAAACGATGGATTCATGCATTTTGCATTA 461
Query 542 TGAGGTTTGATCTTGAGCAAGGGCAGCTCTTAGAAGAGTGTTATCCACCAGATTGTCTCT 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 462 TGAGGTTTGATCTTGAGCAAGGGCAGCTCTTAGAAGAGTGTTATCCACCAGATTGCCTCT 521
Query 602 CACAAGAAGAGGAAATTGAGGTTTCTTTTAACTCTTTCCCGGATTCTGTCTCACAGCATC 661
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 522 CACAAGAAGAGGAAATTGAGGTTTCTTTCAACTCTTTCCCGGATTCTGTCTCACAGCATC 581
Query 662 ATAATCGTTCAAGCATACATGACTGCATTTTCTTTTTCCGGTTTCGTAGACCAAAGAAGA 721
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ATAATCGCTCAAGCATACATGACTGCATTTTCTTTTTCCGGTTTCGTAGACCAAAGAAGA 641
Query 722 ACACTGAGGAGAGAGATGGTAGTGAGAGGTACTTGTATGGTTATGTATTTAATAGGCAGA 781
|||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 642 ACACTGAGGAGAGAGATGATATTGATAGGTACTTGTATGGTTATGTATTTAATAGGCAGA 701
Query 782 GGCATGATGAAAGATTGAAAAGGGGAGGTGAACAGAAGTCTGTGGTGATATTATCGCATA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 702 GGCATGATGAAAGATTGAAAAGGGGAGGTGAACAGAAGTCTGTGGTGATATTATCCCATA 761
Query 842 CGCCTTACTCGAGTGTGTTTAGGCCTTTGTTGCAAATCATTGGTCCTTTGTATTTTGATG 901
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CGCCTTACTCGAGTGTTTTTAGGCCTTTGTTGCAAATCATTGGTCCTTTGTATTTTGATG 821
Query 902 TTGGAAATAAGGCTATTGAACATATTGCTGGTTATGTCTCTATGTGGCCTGCTCCTGTGC 961
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 822 TTGGAAATAAGGCTATCGAACATATTGCTCGTTATGTCTCTATGTGGCCTGCTCCTGTGC 881
Query 962 CTGGTAAGCTAATGGAGCTGCCTATTGGTAATGCAATGCTTAAGGTGAACTTGCCGCCTG 1021
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 882 CCGGTAAGCTAATGGAGCTGCCGATTGGTAATGCAATTCTTAAGGTGAACTTGCCTCCTG 941
Query 1022 CTCATAGCCTTCCCTTGGAAAATGGGATTTTATATGAGGAATCTGCTTCTTCCATGGCTC 1081
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 942 CTCATAGCCTTCCCTTGGAAAATGGGATTTTATATGAGGAATCTGCCTCTTCCATGGCTC 1001
Query 1082 CATTACTCCCTACAAATCAGTCTGTTCCTCAAGGTCTTTTCCATGACGCAGATCTTTTTG 1141
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CATTGCTCCCTACAAATCAATCTGTTCCTCAAGGTCTTTTCCATGACGCAGATCTTTTTG 1061
Query 1142 GCATTTACCGGGGACTATTGTTGCAGCTATGGACATTATGGGAATTGTTACTCATAGGCG 1201
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1062 GCATTTACCGTGGACTATTGTTGCAGCTATGGACATTGTGGGAATTGTTACTCATAGGCG 1121
Query 1202 AGCCCATCCTTATCATAGCACCAACACCTCCGCAATGTTCTGAGGCAGTTGCTTGTCTTG 1261
|||| || ||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1122 AGCCTATTCTTATTATAGCACCAACACCTCCCCAATGTTCCGAGGCAGTTGCTTGTCTTG 1181
Query 1262 TGAGTTTGGTTGCGCCGCTATTTTGTAGTGTCGACTTTAGACCATATTTCACTATACATG 1321
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1182 TGAGTTTGGTTGCGCCGCTATTTTGTAGCATTGACTTTAGACCATATTTCACTATACATG 1241
Query 1322 ATCCAGGATTCGCTCGACTAAACTCACTCCGAGAAGGAGACACTTTCCCGCCAATGGTTT 1381
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1242 ATCCAGGATTTGCTCGACTAAACTCTCTCCGAGAAGGAGACACTTTCCCGCCAATGGTTT 1301
Query 1382 TGGGTGTCACCAATATCTTTTTCCTTAAAGCTCTTCGTAACATCCCTCATGTTGTCTCAG 1441
|||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1302 TGGGTGTCACCAATCTCTTTTTCCTTAAAGCTCTTCGCAATATCCCTCATGTTGTCTCAG 1361
Query 1442 TTGGAACCCCTGCTCCAAACTCAAACCGTGTAGCCTTTACAAGTAGGTCGGCTGGTAAAT 1501
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1362 TTGGAACCCCTGCTCCAAACTCAAACCGTGTAGCATTTACAAGTAGGTCGGCTGGTAAAT 1421
Query 1502 TATCTGTTAAACCTGAAGGATTAGGCGTCCAACAGCTTTCATTAAGAAGGTTCTCTCCTA 1561
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1422 TATCTGTTAAATCTGAAGGATTAGGCATCCAACAGCTTTCATTAAGAAGGTTCTCTCCTA 1481
Query 1562 CAAATTTGCTCAATGCTGTAAAACTTAGGCGAGATGGACCTCTGTGTCTCATGACAGAAC 1621
|||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1482 CAAATTTGCTAAATGCCGTAAAACTTAGGCGAGATGGACCTCTTTGTCTCATGACAGAGC 1541
Query 1622 ACAAGGAAGCTGTCTGGACCACCTACTCTGCAGTAACCAAGCCAGACACTTCGATTTTGA 1681
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct 1542 ACAAGGAAGCTGTCTGGACCACCCACTCTGCAATAACCAAGCCAGACACTTCTATTTTGA 1601
Query 1682 ATAGACTTATTGATGCTGGGATGTCGCCAAGGGTTGAGGAGTCGATGTCAGTTGTGAATA 1741
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1602 ATAGACTTATTGATGCTGGGATGTCGCCAAGGGTTGAGGAGTCAATGTCAGTTGTGAATA 1661
Query 1742 ATGAGATTCTGCGACGCCATTTCCTGGAATTAACTACAAATTTCTTGGCCCCTTTTGGTC 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 ATGAGATTCTGCGACGCCATTTCCTGGAATTAACTACAAATTTCTTGGCCCCTTTTGGTC 1721
Query 1802 CATATTTCCAGGTCAATGCTCCTTCAGATGGGTCTTCCCCATATGTTACCCCTCCTGCGC 1861
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1722 CATATTTCCAGGTCAATGCTCCTTCTGATGGGTCTTCCCCATATGTTACCCCTCCTGCGC 1781
Query 1862 TCCCATCATTTGGTGCTGATGAATTCCTTTCAAATTTATCTGGGAGAGGTGTAGGGAAGT 1921
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1782 TCCCATCATTTGGTGCGGATGAATTCCTTTCGAATTTATCTGCGAGAGGTGTAGGGAAGT 1841
Query 1922 TTTTGTCTAAACGGATGAAATCTAACTGGCCCGACTTGTATAGGCGGTTTCTACGAGGAC 1981
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1842 TTTTGTCTAAACGAATGAAATCCAACTGGCCCGACTTGTATAGGCGGTTTCTACGAGGGC 1901
Query 1982 CCAACTTT-TCGCCTTGGTTCCAAAGACGGCGAGCTGTTGCTGAACAAGAACAGCGTAGA 2040
|||||||| | ||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1902 CCAACTTTAT-GCCTTGGTTTCAAAGACGGCGTGCTGTTGCCGAACAAGAACAGCGTAGA 1960
Query 2041 TTATGGAGGCTAGCTAGAATGAAGACTGATATGAGGCAGATTACGTCTCAGATGAATGAA 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 TTATGGAGGCTAGCTAGAATGAAGACTGATATGAGGCAGATTACGTCTCAGATGAATGAA 2020
Query 2101 TTGGAAGCTGTGGATTCCTTCAATGCCATTGAGAAACACATTAGTGAGGAAGTCAA-GTC 2159
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2021 TTGGAAGCTGTGGATTCCTTCAATGCCATTGAGAAACACATTAGTGAGGAAGTCAAAGAA 2080
Query 2160 GCTGGAATCAGGAGGAGGTGCAGATTCAGAAGGAACGTTTCAGAAACTGAAGAAGGATCT 2219
| ||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2081 TCAGGAGG-AGGAGGTGGTGCAGATTCGGAAGGAACATTTCAGAAACTGAAGAAGGATCT 2139
Query 2220 ACAAGCGGTGTTCAGTGTGCTTCCAAAGGACATGCAGCAACTTCTGCTTTTAAATCCACA 2279
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2140 ACAAGCGGTGTTCAGTGTGCTTCCAAGGGACATGCAGCAACTTCTGCTTTTAAATCCGCA 2199
Query 2280 AAGAGCATCTCTTCTTCAAGATCCATCAGAGCTCCAATGAATGC-TC--T-T-CTTCACT 2334
|||||||||||||||||||||||||||||||||| | ||||| | || | | |||||||
Sbjct 2200 AAGAGCATCTCTTCTTCAAGATCCATCAGAGCTCTATTGAATCCCTCCCTCTTCTTCACT 2259
Query 2335 ACGG-CGTCCATGAGGATTCTGATTTCTTTTCTTCCCTTTTCTGTTTCATTCTTTGAACT 2393
||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2260 -CGGGCTTCCATGAGGATTCTGATTTCTTTTCTTCCCTTT-CTGTTTCATTCTTTGAACT 2317
Query 2394 GTACCaaagaaaaaagagaaaaaTTCTTCATCTTCCCTAATTGTTTACTCGTTTTTT-CT 2452
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2318 ATGCCAAAGAAAAAAGAGAAAAATTCTTCATCTTCCCTAATTGTTTACTCGTTTTTTTCT 2377
Query 2453 TTTGAAACATGAGAATCACACAACACCGAAATCACTGATCACTGCTGTATTTT 2505
|||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 2378 CACGAAACATGGGAATCACACGACACCGAAATCACTGATCACTGCTGTATTTT 2430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95987417400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5