BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73940.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476532 jgi|Araly1|476532|fgenesh2_kg.2__1662__AT1G73940.1 841 0.0
Ahg478588 jgi|Araly1|478588|fgenesh2_kg.3__1289__AT3G12260.1 58.4 7e-08
> Ahg476532 jgi|Araly1|476532|fgenesh2_kg.2__1662__AT1G73940.1
Length=656
Score = 841 bits (455), Expect = 0.0
Identities = 621/694 (89%), Gaps = 39/694 (6%)
Strand=Plus/Plus
Query 41 aagagagtgagagtgacggcgaggaagaagagaa-ATGTGGTTCGCCGGCGGTGGTGGTG 99
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1 AAGAGAGTGAGAGTGACGGCGAGGAAGAAGA-AAGATGTGGTTCGCCGGCGGTGGAGGTG 59
Query 100 GACTGAGGAAGCTCTGCAGAGCGTCGGCTATTTTCGATAATGAGATAAGTTATAACTCTT 159
|||||||||||||||||||| | | | |||||||||||||| | || |||||||
Sbjct 60 GACTGAGGAAGCTCTGCAGA--G-C-G-----TTCGATAATGAGATTACATACAACTCTT 110
Query 160 TGTTGGTGAGATACATGTCCAGAGAACGAGCTGTGAACGTCCGGAAGATAAACCCTAAAG 219
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 111 TGTTGGTGAGATACATGTCGAGAGAACGAGCAGTGAACGTCCGGAAGATAAACCCTAAAG 170
Query 220 TTCCGATCCAAGAAGCTTACGCCATTTCTAATTCTCTCTACGATCTCTTTAAGCTACATG 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TTCCGATCCAAGAAGCTTACGCCATTTCTAATTCTCTCTACGATCTCTTTAAGCTACATG 230
Query 280 GTCCTCTCTCCGTTCCCAACACTTGGCTCCGCGCTCAGGAAGCTGGGGTTAGTGGACTGA 339
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GTCCTCTTTCCGTTCCCAACACTTGGCTCCGCGCTCAGGAAGCTGGGGTTAGTGGACTGA 290
Query 340 ATAGCAAAACACATATGAAGCTATTGTTGAAATGGATGAGAGGGAAAAAGATGCTCAAGT 399
| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 291 ACAGCAAAACGCACATGAAGCTAGTGTTGAAATGGATGAGAGGGAAAAAGATGCTCAAGT 350
Query 400 TAATCTGCAACCAAGTTGGTTCCTCCAAAAAGTTTTTCCACACTGTTTTACCTGAAGATC 459
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 351 TAATTTGCAACCAAGTTGGTTCCTCCAAAAAGTTTTTCCACACCGTTTTACCTGAAGATC 410
Query 460 CTCTACAAGAACAACCGGCTGCTCCGATTGAGAACAAGAAACAAGCCGTCAAGAAGAAAC 519
||||||||| ||||||||||||||| ||||| || | ||||||||| |||| |||||||
Sbjct 411 CTCTACAAGTTCAACCGGCTGCTCCGGTTGAGCACCACAAACAAGCCTTCAAAAAGAAAC 470
Query 520 GAAGCAAATAAGGAAACTGGAGAGAGCAAATCTCTGTGGACAATATTTTGTTTGTTTCTG 579
|||||||||||||||||||||||||||| | | || | | |||
Sbjct 471 GAAGCAAATAAGGAAACTGGAGAGAGCA--T-T--GT------T-T-----------CTG 507
Query 580 TCTCCAAGGGAATGAATTGTTTGAATCTGTTTCTAGTCTCAGAGAAAACGTTTTTTAGTT 639
|||||||||| ||||||| ||| |||||||| ||||||| ||||||||| ||||| ||||
Sbjct 508 TCTCCAAGGGTATGAATTCTTTAAATCTGTTCCTAGTCTGAGAGAAAACATTTTT-AGTT 566
Query 640 GCTGGTGTAGAAATTCTTGAGAAAGTCAGGAGGACTTACCTTGATCTATGAAACTCCTTT 699
| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 567 G-TGGTGTAGAAATTCTTGGGAAAGACAGGAT---TTACCTTGATCTATGAAACTCCGTC 622
Query 700 CCCTTCAATAAAAGAGGATCAGTTACCTCTGCAC 733
||||||||||||||||||||| ||||||||||||
Sbjct 623 CCCTTCAATAAAAGAGGATCAATTACCTCTGCAC 656
> Ahg478588 jgi|Araly1|478588|fgenesh2_kg.3__1289__AT3G12260.1
Length=662
Score = 58.4 bits (31), Expect = 7e-08
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 635 TAGTTGCTGGTGTAGAAATTCTTGAGAAAGTCAG 668
||||||||||||||||||||||||||||| ||||
Sbjct 428 TAGTTGCTGGTGTAGAAATTCTTGAGAAAATCAG 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5