BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73950.1
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926773 jgi|Araly1|926773|scaffold_202334.1 2278 0.0
Ahg472066 jgi|Araly1|472066|fgenesh2_kg.1__2020__AT1G18470.1 1376 0.0
> Ahg926773 jgi|Araly1|926773|scaffold_202334.1
Length=1446
Score = 2278 bits (1233), Expect = 0.0
Identities = 1370/1435 (95%), Gaps = 14/1435 (1%)
Strand=Plus/Plus
Query 113 AGAGAGA-AGAAAGACGATGAACTGTTGGAGAGTGTTGAAATCCGTACAAGCCTCGGTGG 171
||||| | |||||||||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct 6 AGAGAAACAGAAAGACGATGAACTGTGGGAGAGTGTTGAAATCCGCACAAGCCTTGGTGG 65
Query 172 CTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGGTGCTCAAGCTCGATCACTCCAT-T 230
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |
Sbjct 66 CTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGATGCTCAAGCTCGACCACTCCCTGT 125
Query 231 ACTTACTCCTGGTGGGTTGTGTGTCTACCACTGTGGGCTTTCCATGCTGTTGTTGCAAGG 290
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 126 -CTTACTCCTGGTGGGTTGTGTGTTTACCACTGTGGGCTTTTCATGCTGTTGTTGCAAGG 184
Query 291 GGAAGATTCTCGCTTCCTGCTCCAATCGCTCCTCGTAACCGTCATTGGGCTCCATGTCAT 350
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 185 GGAAGATTCTCTCTTCCTGCTCCAATCGCCCCTCGTAACCGTCATTGGGCTCCATGTCAT 244
Query 351 GCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTACTCCTCTGTGTATACCTCGAG 410
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 245 GCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTGCTTCTCTGTGTATACCTCGAG 304
Query 411 ACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTATTTCTCCCTTTATTG 470
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 305 ACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTGTTTCTCCCTTTATTG 364
Query 471 GCGTTTGAAGTAATAATACTGGTGGACAATGCGAGAATGTGTCGGGCACTGATGCCTGGA 530
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 365 GCATTTGAAGTAATAATACTGGTGGACAATGCCAGAATGTGTCGGGCACTGATGCCTGGA 424
Query 531 GATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCG 484
Query 591 ATCTCCATGGTGTTCTTTCTCGCTGCTACAGTCTTTACCCTCCTT-AAGCTGTCTGGCGA 649
|| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 485 ATTTCCATGGTGTTCTTTCTGGCTGCTACAGTCTTTACCCT-CTTAAAGCTGTCTGGCGA 543
Query 650 TGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATCGCAGAGTGCTTTGC 709
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 544 TGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATTGCAGAGTGCTTTGC 603
Query 710 GTTTCTTGTTTGTACAAAATGGTCTAATCCAGTGATTCATAGAAGCTCACGTGATAGAGA 769
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 604 TTTTCTTGTTTGTACAAAATGGTCTAATCCAGTAATTCATAGAAGCTCACATGATAGAGA 663
Query 770 AACTGGGTCATCTTCTACCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTT 829
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AACCGGGTCATCTTCTTCCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTT 723
Query 830 TTCAGAAGACGATAGGAACCAAGAT---ACATGTGGCCTGCAAGACATTGGTGGTCATAT 886
||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 724 TTCGGAAGACGATAGGAACCAAGATACAACATGTGGCCTGCAAGACTTTGGTGGTCATAT 783
Query 887 AATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCC 946
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 AATGAAAATTCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCC 843
Query 947 TGAAGCTGCTAAGTCTATATCTGTCCCTGTCCTGTTTTCTCCACTTTTCCTTTTGCAAGG 1006
|||||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||
Sbjct 844 TGAAGCTGCTAAGTATATACCTGTCCCTGTTCTGTTTTCTCCACTTTTCCTATTGCAAGG 903
Query 1007 CGTTGGTGTTCTATTTGCTGCTTCTAAACTAATAGAGAAGGTTGTTCTACTGCTGCGTGG 1066
|||||||||||||||||||||||||||| |||||||||||||||||||| | |||| ||
Sbjct 904 CGTTGGTGTTCTATTTGCTGCTTCTAAATTAATAGAGAAGGTTGTTCTATTAATGCGCGG 963
Query 1067 CGAAGATGATA-CAGGATTATATTTTAGA-TTTCTATCCAGAGCACATGATTGCTTGGGT 1124
|||||||| | ||||||||||||||||| |||| ||| | ||| |||||||||||||||
Sbjct 964 TGAAGATGA-AGCAGGATTATATTTTAGATTTTC-ATCGACAGCCCATGATTGCTTGGGT 1021
Query 1125 TTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAG 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAG 1081
Query 1185 GAGGAAGCTCGACTATACTTTGATCAAGAATCTGGGTACAATACCTTCTGTGGTCATCCG 1244
||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1082 GAGCAAGCTCGACTATACTTTGATCAAGACTCTGGTTACAATACCTTCTGTGGTCATCCT 1141
Query 1245 CCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCGGAGGAGGTGTGGAGACTTCAA 1304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1142 CCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCTGAGGAGGTGTGGAGACTTCAA 1201
Query 1305 GCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTG 1364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1202 GCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAGCAGGAATATGAGAGACTG 1261
Query 1365 CAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTT 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 CAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTT 1321
Query 1425 CCATGTAGACACCGTGTTCTCTGCAGAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTC 1484
|||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||
Sbjct 1322 CCATGTAGACACCGAGTCCTCTGCAGAAACTGCTCAGACAAGTGTAAAAAATGTCCTTTC 1381
Query 1485 TGCCGTATAA-CTATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACT 1538
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TGCCGTATAAAC-ATCGAAGAGCGGCTCCCCGTATATGATGTTTAACATCTAACT 1435
> Ahg472066 jgi|Araly1|472066|fgenesh2_kg.1__2020__AT1G18470.1
Length=1792
Score = 1376 bits (745), Expect = 0.0
Identities = 1214/1438 (84%), Gaps = 42/1438 (3%)
Strand=Plus/Plus
Query 113 AGAGAGAAGAAAG-ACGATGAACTGTTGGAGAGTG-TTGAAATCCG-TACAAGCCTCGGT 169
||||| |||| || | ||||| || |||||||| || || | || ||||||||| ||
Sbjct 127 AGAGATAAGAGAGAAAGATGAGTTGGAGGAGAGTGCTT-AAGT-CGATACAAGCCTTGGC 184
Query 170 GGCTCACT-GCTTTCTCTTCTCTTTCACGCTCGCT-TTGGTGCTCAAGCTCGATCACTCC 227
|||||| | |||| ||||||| |||||||||| | |||||||| ||||| |||||| ||
Sbjct 185 GGCTCA-TAGCTTACTCTTCTGTTTCACGCTC-TTATTGGTGCTTAAGCTTGATCACACC 242
Query 228 AT-TACTTACTCCTGGTGGGTTGTGTGTCTACCACTGTGGGCTTTCCATGCTGTTGTTGC 286
| | ||| ||| |||||| | |||| | | || ||||||||||| ||||| ||||||||
Sbjct 243 GTCT-CTTCCTCATGGTGGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGC 301
Query 287 AAGGGGAAGATTCTCGCTTCCTGCTCCAATCGCTCCTCGTAACCGTCATTGGGCTCCATG 346
|||||| |||||||| ||||||||||| | ||||| |||||||||||||||||||| ||
Sbjct 302 AAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCATTGGGCTCCTTG 361
Query 347 TCATGCTATTGTCTCAACACCGTTGCTTA-TAGCTTTCGAATTACTCCTCTGTGTATACC 405
|||||| ||||| | |||||||||| || |||| |||||||||||||||||| ||||||
Sbjct 362 CCATGCTGTTGTCGCGACACCGTTGC-TAGTAGCATTCGAATTACTCCTCTGTATATACC 420
Query 406 TCGAGACTGCATATGCT-GATTCGCCGCCAGCTGTGAGCT-TGAAGATTGTATTTCTCCC 463
|||||| | | |||||| | || ||| ||||||||||| | ||||||||| |||| | ||
Sbjct 421 TCGAGAGTTCTTATGCTCG-TTGGCCACCAGCTGTGAG-TCTGAAGATTGCATTTGTACC 478
Query 464 TTTATTGGCGTTTGAAGTAATAATACTGGTGGACAATGCGAGAATGTGTCGGGCACTGAT 523
|||||||| |||||| ||| ||||||||||||||| |||||||||||| ||| ||||
Sbjct 479 GTTATTGGCATTTGAATTAACGATACTGGTGGACAATTTGAGAATGTGTCGAGCATTGAT 538
Query 524 GCCTGGAGATGAAGAGAGCGTGAA-TGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCT 582
||| || || || || ||| | || |||||| ||| ||||||| || |||||||||||||
Sbjct 539 GCCAGGCGACGACGACAGCAT-AACTGATGATGCAATATGGGAGGCACTTCCTCATTTCT 597
Query 583 GGGTTGCGATCTCCATGGTGTTC-TTTCTCGCTGCTACAG-TCTTTACCCTCCTTAAGCT 640
||||||| || |||||||||||| | | |||||||| | | ||||||||||| || ||
Sbjct 598 GGGTTGCAATTTCCATGGTGTTCACGT-TGGCTGCTAC-GTTTTTTACCCTCCTAAAACT 655
Query 641 GTCTGGCGATGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATCGCAGA 700
||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||| || ||
Sbjct 656 TTCTGGCGATGTAGTTGCTCTTGGATGGTGGGATTTATTCATAAATTTTGGAATTGCCGA 715
Query 701 GTGCTTTGCGTTTCTTGTTTGTACAAAATGGTCTAATCCAGTGATTCATAGAAGCTCACG 760
||||||||| ||||||||||| ||||||||||| || ||||| || ||||||||||||||
Sbjct 716 GTGCTTTGCTTTTCTTGTTTGCACAAAATGGTCCAACCCAGTAATCCATAGAAGCTCACG 775
Query 761 TGATAGAGAAACTGGGTCATCTTCTACCAATATTAGATATCTTGACTGGAACAGTGGCCT 820
|| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 776 TGCCCGAGAAACCGGGTCATCTTCTACCACTATCAGATATCTTGACTGGAACAGTGGCCT 835
Query 821 TGGGGTTTTTTCAGAAGACGATAGGAACCAAGATACAT-GT--GGCCTGCAAGACATTGG 877
|| |||| | ||||||| |||||| ||||||||| || || || ||||||| |||||
Sbjct 836 TGTGGTTGCTCCAGAAGAGGATAGGCACCAAGATAGATGGTGCGGTTTGCAAGATATTGG 895
Query 878 TGGTCATATAATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGA 937
||||||||| | ||||| ||| | |||||||||||||| || ||||||||| |||||||
Sbjct 896 TGGTCATATGTTAAAAATTCCCGTTATTGTATTTCAAGTTGTTCTTTGCATGTATCTAGA 955
Query 938 GGGGACTCCTG-AAGCTGCTAAGTCTATAT-C-TGTCCCTGTCCTGTTTTCTCCACTTTT 994
||||||||||| ||| |||||| ||||| | | ||| | | || || |||||||| ||
Sbjct 956 GGGGACTCCTGAAAG-AGCTAAGGATATATCCAT-TCCAT-TACTCTTCTCTCCACTATT 1012
Query 995 CCTTTTGCAAGGCGTTGGTGTTCTATTTGCTGCTTCTAAACTAATAGAGAAGGTTGTTCT 1054
||| ||||||||| | |||||||| ||||||||||||||||| ||||||||| | |||||
Sbjct 1013 CCTATTGCAAGGCCTCGGTGTTCTCTTTGCTGCTTCTAAACTCATAGAGAAGATCGTTCT 1072
Query 1055 AC-TGCTGCGTGGCGAAGATGATACAGGATTATATTTTAGA-TTTCTATCCAGAGCACAT 1112
| | ||||| || |||| || | ||||||| ||||||||| |||| ||| || || |||
Sbjct 1073 -CTTACTGCGCGGGGAAGCTGGTCCAGGATTGTATTTTAGATTTTC-ATCAAGTGCCCAT 1130
Query 1113 GATTGCTTGGG-TTTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGA 1171
||||||||||| ||| ||||||||||| ||||||||| ||||||||||||| ||||| ||
Sbjct 1131 GATTGCTTGGGATTT-TTGCACCATGGTTCCAGGCTATTAGGTTGGTGGTCGATTGACGA 1189
Query 1172 AGGAAGCCGGGAGGAGGAAGCTCGACTATACTTTGATCAAGAATCTGGGTACAATACCTT 1231
||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1190 AGGAAGCCGGGAGGAACAAGCTCGACTGTACTTTGATCAAGAATCTGGTTACAATACATT 1249
Query 1232 CTGTGGTCATCCGCCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCGGAGGAGGT 1291
| |||||||||||||||| |||||||||||||||| ||| |||| ||||| || |||||
Sbjct 1250 CAGTGGTCATCCGCCTGAGGTAGTCAAGAAAATGCCAAAGGAAGATCTTGCTGAAGAGGT 1309
Query 1292 GTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGA 1351
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 1310 ATGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGCCAACAAGA 1369
Query 1352 ATATGAGAGACTGCAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAG 1411
|||||| |||||||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 1370 ATATGAAAGACTGCAAAATGAGAAAGTGCTGTGTAGGGTTTGCTTTGAAAAAGAAATCAG 1429
Query 1412 TGTTG-TACTGCTTCCATGTAGACACCGTGTTCTCTGCAGAAACTGTTCAGACAAGTGTA 1470
| ||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1430 T-TTGGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGAGTCTGTGCAGACAAGTGTA 1488
Query 1471 AAAAATGCCCCTTCTGCCGTATA-ACTATCGAAGAGCGGCTCCCCGTATATGATGTTT 1527
|| ||||| | || |||||| || || ||| | || || | ||||| || ||||
Sbjct 1489 CAACGTGCCCAATATGTCGTATAGAC-ATTGAAAAACGACTATCTGTATACGACGTTT 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68524350755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5