BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73965.1
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476536 jgi|Araly1|476536|fgenesh2_kg.2__1666__AT1G73965.1 808 0.0
> Ahg476536 jgi|Araly1|476536|fgenesh2_kg.2__1666__AT1G73965.1
Length=671
Score = 808 bits (437), Expect = 0.0
Identities = 604/680 (89%), Gaps = 30/680 (4%)
Strand=Plus/Plus
Query 1 GATGGTCCTATGATCTTTAATCTCCATGGCGACGACTAGAGTCTCACATGTCTTAGGGTT 60
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GATGGTTCTATGATCTTTAATTTCCATGGCGACGACTAGAGTCTCACATGTCTTAGGTTT 60
Query 61 TCTTCTATGGATCTCTCTTCTCATCTTCGTCTCCATAGGGTTGTTTGGCAATTTCAGCTC 120
| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 61 TTTTCTATGGATCTCTCTTCTCATCTTCGTCTCTAAAGGGTTGTTTGGCAATTTCAGCTC 120
Query 121 CAAACCCATAAACCCTTTTCCTTCTCCGGTTATTACCTTGCCGGCCC-TTTACTACCGGC 179
|||| |||||||| ||| |||||||| |||||||||||||| |||| ||| ||||||||
Sbjct 121 CAAATCCATAAACTATTTCCCTTCTCCAGTTATTACCTTGCC-GCCCTTTTCCTACCGGC 179
Query 180 CGGGAAGAAGAGCTTTGGCGGTGAAAACGTTTGACTTCACACCGTTCTTGAAAGATCTTC 239
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 CGGGAAGGAGAGTTTTGGCGGTGAAAACGTTTGACTTCACACCGTTCTTGAAAGATAGTG 239
Query 240 GCCGGAGTAATCATC-GGAAAGCTTTGCCGGCGGGAGGATCCGAGATTGACCCGAGATAT 298
||||||||||||| | |||||| ||||||| |||||||||| || || || |||||||||
Sbjct 240 GCCGGAGTAATCA-CTGGAAAGATTTGCCGCCGGGAGGATCAGAAATCGATCCGAGATAT 298
Query 299 GGCGTTGAAAAACGACTCGTCCCATCTGGTCCAAACCCCTTGCACCACTGATTTGTCTTC 358
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 GGCGTTGAGAAACGGCTCGTCCCATCTGGTCCAAACCCCTTGCACCACTGAATTGTCTTC 358
Query 359 TTAAtttttgctttaagttttctttattttttCAAAGATATAGTAAAACACGTATATTT- 417
|||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 359 TTAATTTTTGCTTTAAATTTTCTTTATATTTTCATAGATATAGTAAAACACGTATATGAC 418
Query 418 TACTAATACTAGAAGATTAATT---CATAAGAT-ATTAGCTAATATTCTTTCTTGGTATG 473
|| ||||||||||||||||||| ||| |||| | ||||||||||||||||||||| |
Sbjct 419 TAATAATACTAGAAGATTAATTATTCATCAGATGAA-AGCTAATATTCTTTCTTGGTACG 477
Query 474 TATATGTCTTGAATTATTT----ATTCTTCTTTGTCATGTGAT-TTAttt-tttttCACT 527
||||||||||| ||| ||| ||||||||||||||||||| || ||| |||||||||
Sbjct 478 TATATGTCTTGGATTTTTTTTTTATTCTTCTTTGTCATGTGAAGTT-TTTATTTTTCACT 536
Query 528 TCTGGTGTAATGATGTAATTTACTCATCTTTTTATTCTTTCTTCATTTGATACTAATCGT 587
| |||||||||||||||||||||||||||||||||| ||| |||||||||| || | |
Sbjct 537 TTTGGTGTAATGATGTAATTTACTCATCTTTTTATTATTT-TTCATTTGATG-TA--C-T 591
Query 588 TGTAATAATAAAGCATCATGTA---A-GCA---GAAAT-AAAAGAAAAGATCATGTACAC 639
|||||||||| ||||||||| | | | |||| |||||||||||||||||||||
Sbjct 592 AATAATAATAAAACATCATGTACGTAAGAAAAAGAAAAGAAAAGAAAAGATCATGTACAC 651
Query 640 ATTTGTTTAAATGCCAAAAA 659
||||||||||||||||||||
Sbjct 652 ATTTGTTTAAATGCCAAAAA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24665527299
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5