BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G73970.1
Length=2853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476537 jgi|Araly1|476537|fgenesh2_kg.2__1667__AT1G73970.1 3986 0.0
> Ahg476537 jgi|Araly1|476537|fgenesh2_kg.2__1667__AT1G73970.1
Length=2579
Score = 3986 bits (2158), Expect = 0.0
Identities = 2449/2589 (95%), Gaps = 22/2589 (1%)
Strand=Plus/Plus
Query 228 ACGATTTTTCTGGGTTT-TTCAGTTTTGGATCAATCCATAATCTGTCGTGA-TTAGGGTT 285
||||||||||||||||| ||||| | || ||||||||||||||| |||||| |||||| |
Sbjct 1 ACGATTTTTCTGGGTTTATTCAGCTCTGAATCAATCCATAATCTATCGTGATTTAGGGCT 60
Query 286 TTATACCTTGATGAGGATTTACTGAATTAGTTGTA-TTAAAGATGGCGAGAAAAGCTAAC 344
| ||| ||||||||| || |||||||||||| || || |||||||||||||||||||||
Sbjct 61 TAATA-CTTGATGAGAATCTACTGAATTAGTCCTAGTT-AAGATGGCGAGAAAAGCTAAC 118
Query 345 AATAGTTTTTTCCTTGAAGAATGGTTAAGGACTGTGAGTGGAAGTAGTGTCTCTGGTGAT 404
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AACAGTCTGTTCCTTGAAGAATGGTTAAGGACTGTGAGTGGAAGTAGTGTCTCTGGTGAT 178
Query 405 CTAGTGAAGCAAAATTCTGCTCCATCTGCTAGGTCGATTATTCAAGCATGGTCTGAGATT 464
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 179 TTAGTGAAGCAAAATTCTGCTCCATCTGCGAGGTCGATTATTCAAGCATGGTCTGAGATT 238
Query 465 CGTGAATCTCTTCAAAACCAAAACTTTGATTCACGTTACCTTCAAGCTTTGAGAGCTTTG 524
||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 239 CGTGAATCTCTCCAAAACCATAACTTTGATACACGTTATCTTCAAGCTTTGAGAGCTTTG 298
Query 525 GTTAGCTCTGAGTCCACTATCCATGTTGCAGATCCCCAAGCAAAGCTACTTATTTCTATA 584
||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 299 GTTAGCTCTGACTCCACTATCCATGTCGCAGATCCCCAAGCAAAGCTACTTATATCCATA 358
Query 585 CTAGCTTTTC---AAGATGTATCTCTTCCGTCTGAGTCTTACACACTTGTTCTCAGACTA 641
||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 359 TTAGCTTTACGAGAAGATGTATCTCTTCCGTGTGACTCTTACACACTTGTTCTCAGACTA 418
Query 642 CTCTATGTGTGGATTAGGAAAGCATTTCGACCGTCTCAAGCACTTGTTGGTGT-AGCGGT 700
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 419 CTCTATGTGTGGATTAGGAAAGCATTTCGACCGTCTCAAGCTCTTGTTGGT-TCAGCGGT 477
Query 701 TCAGGCCATTCGTGGCGTTGTTGATGACAGGCGTAATCTCCAACCAGCCTTAGTAGCGCA 760
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 478 TCAGGCCATTCGTGGTGTTGTTGATGACAGGCGTAATCTCCAACCAACTTTAGTAGCGCA 537
Query 761 GAGTGTTCTGGTTTCTGGTGCGTTTGCGTGTGTTCCTTCTCTGTCAGGAGACGTGAAAGT 820
||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |
Sbjct 538 GAGCGTTCTGGTTTCTGGTGCCTTTGCGTGTGTTCCTTCTCTGTCTGGAGACTTGAAATT 597
Query 821 CTTATGCTTGGAATTGTTATGCAGGCTTTTGGAAGAAGAGTACTCTTTAGTGGGATCTCA 880
||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 598 CTTATGCTTGGAACTGTTATGCAGGCTTTTGGAAGAAGAGTACTCATTGGTGGGATCTCA 657
Query 881 AGAAGAACTTGTTCCTGTAGTGCTTGCAGGAATTGGGTATGCTTTATCTTCTTCGTTGGA 940
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 AGAAGAACTTGTTCCTGTACTGCTTGCAGGAATTGGGTATGCTTTATCTTCTTCGCTGGA 717
Query 941 TGTTCATTACGTCAGACTATTGGATTTATTGTTTGGCATTTGGTTAAAAGACGAGGGTCC 1000
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGTTCATTACCTTAGACTATTGGATTTATTGTTTGGCATTTGGTTAAAAGACGAGGGTCC 777
Query 1001 TCGTGGCACTGTCACTTACGGTCTGATGATTCTTCATTTGATTGAGTGGGTTGTGTCAGG 1060
|||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 778 TCGTGGCAGTGTCACTTATGGTCTGATGATTCTTCATTTGATCGAGTGGGTTGTGTCAGG 837
Query 1061 TTATATGCGGTCTAATTCTATCAACAAGATGTCTCTTTTTGCGAACGAGGTACTAGAGAC 1120
||||||| ||||||||| ||||||||||||||||||||||| ||||||||| || |||||
Sbjct 838 TTATATGAGGTCTAATTATATCAACAAGATGTCTCTTTTTGGGAACGAGGTTCTCGAGAC 897
Query 1121 TTCTAAGGAAAAGTATGCTGTTTTCGCTGTCTTCATGGCAGCAGCTGGGGTAGTGAGAGC 1180
|||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 898 TTCTAAGGAAAAGTATACTGTTTTTGCTGTCTTCATGGCAGCAGCTGGGGTACTGAGAGC 957
Query 1181 TTCCACGGCAGGATTCAGTAGTGGTGCACAGAGTTTGGAGATTTCTAAACTAAGAAATTC 1240
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 958 TTCCACGGCAGGATTCAGTAGTGGCGCACAGAGTTTTGAGATTTCTAAACTAAGAAATTC 1017
Query 1241 AGCTGAAAAGCGAATAGAATTTGTAGCTCAAATTTTAGTTTCTAATGGTAATGTTGTTAC 1300
||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||
Sbjct 1018 AGCTGAAAAGCGAATAGAATTTGTAGCTCAACTTTTAGTGTCTAATGGT-A--TTGTTAC 1074
Query 1301 ACTTCCAACCACACAGAGAGAAGGTCCCCTGTTGAAGTGCTTTGCTATTGCATTGGCTCG 1360
||||||||||| |||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1075 ACTTCCAACCATTCAGAGAGAAGGTCCTCTGTTGAAGTGCTTTGCTATAGGATTGGCTCG 1134
Query 1361 ATGTGGGTCTGTTTCTTCCTCTGCTCCTCTGCTTTTGTGTCTCACTTCTGCATTGTTAAC 1420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATGTGGGTCTGTTCCTTCCTCTGCTCCTCTGCTTTTGTGTCTCACTTCTGCATTGTTAAC 1194
Query 1421 TCAGGTATTTCCTTTAGGCCAGATATATGAATCATTTTGCAATGCTTTTGGCAAAGAGCC 1480
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1195 TCAGGTATTTCCTTTAGGCCAGATATATGAATCATTTTGCAAAGCTTTTGGCGAAGAGCC 1254
Query 1481 TATTGGACCAAGACTCATTTGGGTCAGGGAGCATCTTTCTGATGTTCTTTTCAAGGAATC 1540
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1255 TATTGGACCAAGACTCATTTGGGTCAGGGAGCATCTCTCTAATGTTCTTTTCAAAGAATC 1314
Query 1541 AGGGGCCATATCTGGGGCTTTCTGCAATCAATAT-TCATCAGCAAGTGAAGAGAACAAGT 1599
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1315 AGGGGCCATAACTGGGGCTTTCTGCAATCAATATAT-ATCAGCAAGTGAAGAGAACAAGT 1373
Query 1600 ATATTGTGGAGAATATGATTTGGGATTTCTGTCAAAATCTCTACTTACAGCACCGTCAAA 1659
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ATATTGTGGAGAATATGACTTGGGATTTCTGTCAAAATCTCTACTTACAGCACCGTCAAA 1433
Query 1660 TTGCTATGTTGCTTTGTGGTATAGAAGATACATTGCTTGGAGACATCGAGAAAATTGCAG 1719
||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1434 TTGCTCTGTTGCTTCGTGGTATAGAAGATACATTGCTTGGAGACATAGAAAAAATTGCAG 1493
Query 1720 AATCATCTTTCCTTATGGTTGTCGTCTTTGCGCTAGCTGTTACGAAACAATGGCTAAAAC 1779
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||
Sbjct 1494 AATCATCTTTCCTTATGGTTGTTGTCTTTGCGCTAGCTGTTACGAAGCAATGGTTAAAAC 1553
Query 1780 CAATAGTGTCTAAAGAAAGAAAAATGGTGACATCAGTTAAGATATTAGTTTCGTTCTCCT 1839
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1554 CACTAGTGTCTAAAGAAAGAAAAATGGAGACATCAGTTAAGATATTAGTTTCGTTCTCCT 1613
Query 1840 GTGTAGAGTATTTCAGGCATATTCGTTTACCTGAATACATGGAGACAATTAGAGAGGTGA 1899
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 GTGTAGAGTATTTCAGACATATTCGTTTACCTGAATACATGGAGACAATTAGAGAGGTGA 1673
Query 1900 TTTCATGTGTCCAGGAGAATGATGCTCCTTGTGTTTCATTTGTAGAGTCCATTCCTGCCT 1959
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1674 TTTCATGTGTCCAGGAGAATGATGCTCCTTGTGTTTCATTTGTAGAGTCTATTCCTGCCT 1733
Query 1960 ATGATAGCTTGACGAATCCGAAAGACTTGTTTACGCAAAGGATAAAATATGAATGGTCAA 2019
|| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1734 ATAATAGCTTGACGACTCCGAGAGACTTGTTTACGCAGAGGATAAAATATGAATGGTCAA 1793
Query 2020 GAGATGATGTGCAGACATCTCGAATATTGTTTTATCTTCGAGTAATCCCAACTTGCATCG 2079
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1794 GAGATGATGTGCAGACATCTCGAATACTGTTTTATCTTCGAGTAATCCCAACTTGCATTG 1853
Query 2080 GACGGTTATCTGCTTCTGCCTTCAGGGGAGTGGTTGCATCAACCATGTTTTTATATATTG 2139
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1854 GACGGTTATCTGCTTCTGACTTCAGGGGAGTCGTTGCATCAACCATGTTTTTATATATTG 1913
Query 2140 GACATCCTAACAGAAAAGTGGCGCA-AGCATCTCATACGTTGTTGGCAGCATTTCTCTCT 2198
||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 1914 GACATCCTAACAGAAAAGTGGCG-AGAGCATCTCATACGTTGTTGGTAGCATTTCTCTCT 1972
Query 2199 TCAGCAAAAGAATCAGAGGAGGACGAACG-AACTCAATTCAAAGAACAACTTGTTTTCTA 2257
||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||
Sbjct 1973 TCAGCAAAAGAATCAGAGGAGGACGAACGAAAC-CAACTCAAAGAACACCTTGTTTTCTA 2031
Query 2258 TTACATGCAACGATCTTTGGAGGTTTACCCTGAGATCACACCTTTTGAAGGTTTAGCTTC 2317
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2032 TTACATGCAACGATCTTTGGAGGGTTACCCTGAAATCACACCTTTTGAAGGTTTAGCTTC 2091
Query 2318 CGGCGTTGCAACCTTGGTCCAGCATCTACCTGCGGGAAGTCCTGCTATATTTTATTCTGT 2377
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2092 CGGCGTTGCAACCTTGGTCCGGCATCTACCTGCAGGAAGTCCTGCTATATTTTATTCTGT 2151
Query 2378 TCATAGCCTTGTTGAGAAGGCTTCTACATTTAGCACCGAA-TCATTGCAAGGCAGAAAGT 2436
|||||||||||||||||||||||||||||||||||| || || |||||||| |||||||
Sbjct 2152 CCATAGCCTTGTTGAGAAGGCTTCTACATTTAGCACC-AATTCTTTGCAAGGAAGAAAGT 2210
Query 2437 CTGATCCTGGTAATCAGATTCTTGAGTTGCTTTTGCGACTTGTCTCTTTGGTTGATATAC 2496
| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2211 CCGATCCTGGTAATCAAATTCTTGAGTTGCTTTTGCGACTTGTCTCTCTGGTTGATATAC 2270
Query 2497 AAGTGTTGCCATATCTTATGAAGTCATTGGCACAGCTAGTTATAAAGTTACCAAAAGAAA 2556
||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 2271 AAGTGTTGCCATATCTTATGAAGTCATTGGCGCAACTAATTATAAAGTTACCAAAAGAAA 2330
Query 2557 GACAGAACGTTGTGCTTGGTGAATTGTATGGTCAAGTGGCTGAGTCAGACGATGTGATTC 2616
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2331 GACAGAACATGGTGCTTGGTGAATTGTATGGTCAAGTGGCTGAGTCAGACGATGTGATTC 2390
Query 2617 GCAAGCCTTCTTTGGTCTCTTGGCTACAGTCACTGAACTACTTATGTTCTAATAACCGTA 2676
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2391 GCAAGCCTTCTTTGGTCTCTTGGCTACAGTCACTGAACTACTTATGTTTTAATAACCGGA 2450
Query 2677 CTGAAGTTTTAGCTTCTGGATCAACGATAGACACTTCGAACCAGTTGGCTGCTCGACTCT 2736
||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2451 CTGAAGTCTCAGCTTCTGGCTCAACGATAGACACTTCGAACCAGTTGGCTGCTCGACTCT 2510
Query 2737 AGGGATCTCCTCATAGTTTACAAACATGTGAAATAGAAT-AAAGTTTGTATGACTTGTAT 2795
||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||| | |||
Sbjct 2511 AGGGATCTCCTCATAATTTGCAAACATGTGAAATATAATTAAAGTTTGTATGACGTATAT 2570
Query 2796 CATGGAATT 2804
|||||||||
Sbjct 2571 CATGGAATT 2579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107681122615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5