BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74000.1
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476540 jgi|Araly1|476540|fgenesh2_kg.2__1670__AT1G74000.1 1504 0.0
Ahg476542 jgi|Araly1|476542|fgenesh2_kg.2__1672__AT1G74020.1 725 0.0
> Ahg476540 jgi|Araly1|476540|fgenesh2_kg.2__1670__AT1G74000.1
Length=1097
Score = 1504 bits (814), Expect = 0.0
Identities = 957/1027 (93%), Gaps = 5/1027 (0%)
Strand=Plus/Plus
Query 1 GATAGATAA-AAAGAACACAACCAAAGAAACATGATGAGGTCGTTTGTCTCGTTGATttc 59
||| ||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1 GATGGATAACAAA-AACACAACCAGAGAAACATTATGAGGTCGTTTGTCTCCTTGATTTC 59
Query 60 tcttctccttcttctctcattttcttcatctgttctctcAACCAAAAAGTCATCATTTCA 119
| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct 60 TTTTCTCCTTCTTCTCTCATTTTCTTCATCTGTTTTCTCAGCCAAAGAG---TCATTTCA 116
Query 120 AAAACTTCCGGTGCCAGGAAACAGAACAGGCCCTGAAGCTTTCGCTTTTGATTCCACCGG 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAAGCTTCCGGTGCCAGGAAACAGAACAGGCCCTGAAGCTTTCGCTTTTGATTCCACCGG 176
Query 180 AAAAGGATTCTACACCGGAGTCACCGGCGGTAAAATCCTAAAATATCTTCCAAAGAAAGG 239
||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 177 AAAAGGATTCTACACTGGAGTCTCCGGCGGTAAAATCCTAAAATATCTTCCAAGGAAAGG 236
Query 240 TTATGTCGACTTTGCCCAGATCACAAACTCTTCGAAGTCTTCGTTGTGCGACGGAGCACT 299
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 237 TTATGTCGATTTTGCCCAGATCACAAACTCTTCGAAGTCTTCTTTGTGCGACGGAGCACT 296
Query 300 TGGAACCACTAACGTCGAAAAATGTGGTCGACCAGCCGGAATAGCCTTCAACACGAAAAC 359
|||||| |||||||| | ||||||||| ||||| || |||||||| ||||||| ||||||
Sbjct 297 TGGAACTACTAACGTTGGAAAATGTGGCCGACCGGCGGGAATAGCTTTCAACAGGAAAAC 356
Query 360 AGGTGATCTTTACGTCGCAGATGCTGCATTGGGTCTCCACGTCATCCCTCGCCGTGGGGG 419
|||||||||||||||||| |||||| | ||||||||||||||| | |||| | || ||
Sbjct 357 AGGTGATCTTTACGTCGCTGATGCTCCTTTGGGTCTCCACGTCGTTTCTCGAGGCGGCGG 416
Query 420 TTTGGCTAAGAAGATCGCCGACAGTGTCGGCGGCAAGCCCTTTTTGTTTCTTGACGGGCT 479
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||
Sbjct 417 TTTGGCTAAGAAGATCGCCGACAGTGTCGACGGCAAGCCCTTCTTGTTTCTCGACGGTCT 476
Query 480 TGACGTAGATCCCACTACCGGCGTCGTCTATTTCACTTCCTTCAGCTCAACATTTGGCCC 539
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 CGACGTTGATCCCACTACCGGTGTCGTCTATTTCACTTCCTTCAGCTCAACATTTGGCCC 536
Query 540 TAGGGATGTGTTGAAAGCAGTGGCAACAAAAGACTCGACCGGTAAGTTCTTCAAATACGA 599
||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 537 TAGCGATGTTTTGAAAGCAGTGGCAACAAAAGACTCGACCGGTAAGCTCTTCAAATACGA 596
Query 600 TCCATCAAAAAAGGTCGTGACTGTATTGATGGAAGGTCTTAGCGGCTCAGCCGGATGTGC 659
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 597 TCCATCAAAAAAGGTCGTGACTGTATTGATGGAAGGTCTAAGTGGCTCAGCCGGATGTGC 656
Query 660 CGTTAGCTCAGATGGTTCATTCGTGCTGGTTGGTCAGTTCACAAAAAGTAACATCAAGAG 719
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 657 CGTTAGCTCAGATGGTTCATTCGTGCTGGTTAGTCAGTTCACAAAGAGTAACATCAAAAG 716
Query 720 GTATTGGATCAAAGGATCCAAAGCTGGTACTTCTGAAGACTTCACCAACTCGGTCTCGAA 779
|||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||||
Sbjct 717 GTATTGGATCAAAGGAGCTAAAGCTGGTTCTTTTGAAGACTTCACCAACTCGGTCTCGAG 776
Query 780 CCCTGACAACATCAAGAGGATCGGTTCTACTGGAAACTTTTGGGTTGCTTCGGTCGTGAA 839
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 777 CCCTGACAACATCAAGAGGATCGGTTCTTCTGGAAACTTTTGGGTTGCTTCGGTCGTGAA 836
Query 840 CTCAGCCACCGGACCGACAAACCCTTCGGCGGTTAAAGTCAGTTCTGCCGGTAAAGTGCT 899
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 837 CTCAGCCACCGGACCGACAAACCCTTCGGCGGTTAAAGTCAGTTCTGATGGTAAAGTGAT 896
Query 900 TCAGACCATTCCCCTAAAAGACAAGTTTGGGGATACTTTGGTTAGTGAAGTTAACGAATA 959
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 897 TCAGACCATTCCCCTAAAAGATAAGTTTGGGGATACTTTGGTTAGCGAGGTTAATGAATT 956
Query 960 CAAAGGACAGCTTTACATCGGAGCTCTTTTTGGTCCTTTCGCCGGAATTCTTAAGCTTTA 1019
|| ||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 957 CAGAGGACGGCTTTATATCGGAGCTCTTTTTGGTCCTTTTGCCGGAATTCTTAAGCTTTA 1016
Query 1020 AAGTGAA 1026
|||||||
Sbjct 1017 AAGTGAA 1023
> Ahg476542 jgi|Araly1|476542|fgenesh2_kg.2__1672__AT1G74020.1
Length=1084
Score = 725 bits (392), Expect = 0.0
Identities = 816/1016 (80%), Gaps = 47/1016 (5%)
Strand=Plus/Plus
Query 23 AAAGAAACATG-ATGAGGTCG-TTTGTCTCGTTGATttctcttctccttcttctctcat- 79
|||||||| | |||| |||| |||| | | |||||| |||||| ||||||||||| |
Sbjct 30 AAAGAAAC-GGTATGACGTCGTTTTG-CCCCATGATTTTTCTTCTTCTTCTTCTCTC-TC 86
Query 80 tttcttcatct-gttctctcAACCAAAAAGTCATCATTT-CAAAAACTTCCGGTGCCAGG 137
|||| || | ||| |||| | | | | | || ||| || |||||||||||||| ||
Sbjct 87 TTTCCTC-GGTGGTTTTCTC--CGATGATG-CGTC-TTTCCAGAAACTTCCGGTGCC-GG 140
Query 138 AAA-CAGAACAGGCCCTGAAGCTTTCGCTTTTGATTCCACCGGAAAAGGATTCTACACCG 196
||| || ||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 141 AAAGTAGGTCAGGCCCTGAAGCTTTCGCCTTTGATTCCACCGGAAAAGGGTTCTACACCG 200
Query 197 GAGTCACCGGCGGTAAAATCCTAAAATATCTTCCAAAGAAAGGTTATGTCGACTTTGCCC 256
||||| |||| ||||||||||| || || ||||| ||| |||||||||||||||||||
Sbjct 201 GAGTCTCCGGTGGTAAAATCCTCAAGTACCTTCCCGAGACGGGTTATGTCGACTTTGCCC 260
Query 257 AGATCAC-AAACTCTTCGAAGTCTTCGTTGTGCGACGG-AGCACTTGGAACCAC-TAACG 313
||||||| || || ||||| ||||| | |||||| || | | ||||||| | | | |
Sbjct 261 AGATCACTGAA-TCCTCGAACTCTTCATGGTGCGATGGAAATA-TTGGAACGGCTTTA-G 317
Query 314 TC-GAAAAATGTGGTCGACCAGCCGGAATAGCCTTCAAC-ACGAAAACAGGTGATCTTTA 371
| | || ||||||| ||||||| |||||||| |||||| | ||||||||||||||| ||
Sbjct 318 -CAGGAAGATGTGGTAGACCAGCGGGAATAGCGTTCAACGA-GAAAACAGGTGATCTCTA 375
Query 372 CGTCGCAGATGCTGCATTGGGTCTCCACGTCATCCCTCGCCG-TGGGGGTTTGGCTA-AG 429
|||||| ||||| | |||||||| ||||| | ||| ||| || |||||||||| |
Sbjct 376 CGTCGCCGATGCACCGTTGGGTCTTCACGTTGTTTCTC-CCGCAGGTGGTTTGGCTACA- 433
Query 430 AAGATCGCCGACAGTGTCGGCGGCAAGCCCTTT--TTGTTTCTTGACGGGCTTGACGTAG 487
||||||||||| ||||| | ||| ||| ||||| | ||||||||||| |||||||| |
Sbjct 434 AAGATCGCCGATAGTGTTGACGGAAAG-CCTTTCAAT-TTTCTTGACGGTCTTGACGTTG 491
Query 488 ATCCCACTACCGGCGTCGTCTATTTCACTTCCTTCAGCTCAAC-ATTTGGCCCTAGGGAT 546
|||||||||| || ||||| || ||||||||||||||||| || || ||| | |
Sbjct 492 ATCCCACTACTGGTGTCGTTTACTTCACTTCCTTCAGCTC-ACGCTTCACCCCAATCCAA 550
Query 547 GTGTTGAAAGCAGTGGCAACAAAAGACTCGACCGGTAAGTTCTTCAAATACGATCCATCA 606
||||||| ||| ||| ||| ||| ||||||| ||| ||| ||||||||| ||||||
Sbjct 551 GTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAATACGACCCATCA 610
Query 607 A-AAAAGGTCGTGACTGTATTGATGGAAGGTCTTAGCGGCTCAGCCGGATGTGCCGTTAG 665
| ||| || ||||| |||||||||||||| || || || |||||||| ||||| || ||
Sbjct 611 ACCAAA-GTTGTGACCGTATTGATGGAAGGGCTAAGTGGTTCAGCCGGGTGTGCAGTGAG 669
Query 666 CTCAGATGGTTCATTCGTGCTGGTTGGTCAGTTCACAAAAAGTAACATCAAGAGGTATTG 725
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 670 CTCAGATGGTTCATTCGTGTTGGTTAGTCAGTTCACAAAGAGTAACATCAAGAGGTATTG 729
Query 726 GATCAAAGGATCC-AAAGCTGGTACTTCTGAAGACTTCACCAACTCGGTCTCGAACCCTG 784
|||||| ||| || ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 730 GATCAAGGGA-CCAAAAGCTGGTTCTTCTGAAGACTTCACCAACTCGGTCTCAAACCCTG 788
Query 785 ACAACATCAAGAGGATCGGTTCTACTGGAAACTTTTGGGTTGCTTCGGTCGTGAACTCAG 844
|||||||||| || || |||||||||||||| |||||||| ||||| || |||||| ||
Sbjct 789 ACAACATCAAAAGAATTGGTTCTACTGGAAATTTTTGGGTCGCTTCCGTGGTGAACA-AG 847
Query 845 C-CACCG-GACCGACAAACCCTTCGGCGGTTAAAGTCAGTTCTGCCGGTAAAGTGCTTCA 902
|| || | || || ||||| || || || ||||| | |||| ||| ||||||||||
Sbjct 848 ATCATCGTG-CCTACGAACCCATCAGCAGTCAAAGTAAACTCTGATGGTGAAGTGCTTCA 906
Query 903 GACCATTCCCCTAAAAGACAAGTTTGGGGATACTTTGGTTAGTGAAGTTAACGAATACAA 962
||| || || || ||||| || ||||| || |||||| |||||||||| ||||||| | |
Sbjct 907 GACAATACCTCTCAAAGATAAATTTGGAGACACTTTGCTTAGTGAAGTCAACGAATTCGA 966
Query 963 AGGACAG-CTTTACATCGGAGCTCTTTTTGGTCC-TTTCGCCGGAATTCTTAAGCT 1016
|| || || || |||||| |||| || || ||| || ||||||||||||||
Sbjct 967 GGG-CAATCTATATATCGGAACTCTCACAGGACCATTT-GCTGGAATTCTTAAGCT 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42659544123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5