BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74010.1
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476541 jgi|Araly1|476541|fgenesh2_kg.2__1671__AT1G74010.1 1561 0.0
Ahg476542 jgi|Araly1|476542|fgenesh2_kg.2__1672__AT1G74020.1 833 0.0
> Ahg476541 jgi|Araly1|476541|fgenesh2_kg.2__1671__AT1G74010.1
Length=1111
Score = 1561 bits (845), Expect = 0.0
Identities = 980/1044 (94%), Gaps = 14/1044 (1%)
Strand=Plus/Plus
Query 51 ATTCGTGTACTAATTTTACCTTCATAGACT---TAATTAAGATACG----ATCATGGCGT 103
||||||||||||||||||| |||||||||| |||||||||||| || |||||||
Sbjct 1 ATTCGTGTACTAATTTTACTTTCATAGACTCAAAAATTAAGATACGATATATAATGGCGT 60
Query 104 CGTTTGTCTTTGTGAtttctcttcttcttctctctttttcgtcggctgttttctccgatg 163
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 61 CGTTTGTCTTTGTGATTTCTCTTCTTCTTCTCTCTCTTTCGTCTGCTGTTTTCTCCGATG 120
Query 164 atgcttcttttcAGAAACTTCCGGTGCC-TGACAAGAGGTCAGGCCCTGAATCTTTCGCC 222
| || ||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 ACGCGTCTTTCCAGAAACTTCCGGTGCCGGGA-AAGAGGTCAGGCCCTGAATCTTTCGCC 179
Query 223 TTTGACTCTACCGG---CGGATTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTAC 279
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTGATTCCACCGGCAACGGATTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTAC 239
Query 280 GTTCCTGGGAAGGGTTATGTCGATTTTGCCCAGATCACAGATTCCTCGAACTCGGCATGG 339
||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 GTTCCCGACAAGGGTTATGTCGATTTTGCCCAGATCACAGAATCCTCGAACTCGGCATGG 299
Query 340 TGCAACGGAGCA-TTAGGAACCGCTTTCGCCGGAAAGTGTGGTCGACCAGCGGGAATAGC 398
|||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 300 TGCAACGGAGCACTT-GGAACCGCTTTCGCAGGAAAGTGCGGTCGACCAGCGGGAATAGC 358
Query 399 CTTAAACAGCAAAACAGGTGATCTCTATGTCGCCGATGCTCCGTTGGGTCTTCACGTTAT 458
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 359 CTTAAACAGCAAAACAGGTGATCTCTATGTCGCCGATGCTCCATTGGGTCTTCATGTTAT 418
Query 459 CTCTCCCGCAGGAGGTTTGGCCACAAAGCTGGCCGACAGTGTTGACGGAAAGCCTTTCAA 518
| ||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 419 CCCTCCCGCCGGAGGTTTGGCCACAAAGCTCGCCGATAGTGTTGACGGAAAACCCTTCAA 478
Query 519 GTTTCTTGACGGTCTTGATGTTGATCCCACCACCGGCGTCGTCTACTTCACTTCCTTCAG 578
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 GTTTCTAGACGGTCTTGACGTTGATCCCACTACCGGCGTCGTCTACTTCACTTCCTTCAG 538
Query 579 TTCCAAGTTTGGACCCCGGGAAGTGTTAATCGCAGTGGGATTAAAAGACGCGAGCGGAAA 638
||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 539 CTCCAAGTTTGGTCCCCGCGAAGTGTTGATCGCAGTGGGATTAAAAGACGCGAGTGGAAA 598
Query 639 GCTGTTCAAATACGACCCAGCGACCAAAGCCGTGACTGAGTTAATGGAAGGTCTAAGTGG 698
||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 599 GCTCTTCAAATACGACCCAGCGACCAAAGCCGTGACTGAGTTAATGCAAGGACTAAGTGG 658
Query 699 TGCTGCTGGTTGTGCAGTGAGCTCAGATGGTTCATTCGTGCTAGTTAGCGAGTTCATAAA 758
||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 659 TGCGGCTGGTTGCGCCGTGAGCTCAGATGGTTCGTTCGTGCTGGTTAGCGAGTTCATAAA 718
Query 759 GAGTAACATCAAGAAATATTGGATTAAAGGGCCCAAAGCTGGAACTATTGAAGACTTCTC 818
|||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 719 GAGTAACATCAAGAGATATTGGATCAAAGGACCCAAAGCTGGAACTATTGAAGACTTCTC 778
Query 819 AAGTCTTGTCTCGAACCCCGACAACATCAGGAGGGTAGGTTCTACCGGAAATTTCTGGGT 878
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAGTCTTGTCTCGAACCCAGACAACATCAGGAGGGTAGGTTCTACCGGAAATTTCTGGGT 838
Query 879 CGCCTCTGTCGTGAACAAGGTTGTTATGCCTACCGACCCTAGGGCGGTCAAACTAGACGC 938
||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 839 GGCCTCCGTCGTGAACAAGGTTGTCATGCCTACCGACCCTAAGGCGGTCAAACTAGACGC 898
Query 939 TAATGGAAAAGTGCTCCAGACCATTTTCCTCAAGAATGAGTTTGGGAATACTTTGCTTAG 998
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TAATGGAAAAGTGCTTCAGACCATTTTCCTCAAGAATGAGTTTGGGAATACTTTGCTTAG 958
Query 999 TGAAGTCAACGAGTTCAACGGCCATCTTTACATCGGAACTCTTACTGGACCTTTCGCCGG 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGAAGTCAACGAGTTCAACGGCCATCTTTACATCGGAACTCTTACTGGACCTTTCGCCGG 1018
Query 1059 AGTCATGAAACTTTAAATTGGTAT 1082
||||||||||||||||||||||||
Sbjct 1019 AGTCATGAAACTTTAAATTGGTAT 1042
> Ahg476542 jgi|Araly1|476542|fgenesh2_kg.2__1672__AT1G74020.1
Length=1084
Score = 833 bits (451), Expect = 0.0
Identities = 800/964 (83%), Gaps = 42/964 (4%)
Strand=Plus/Plus
Query 119 tttc-tcttcttcttctctctttttcgtcggct-gttttctccgatgatgcttcttttcA 176
|||| |||||||||||||||| |||| |||| | ||||||||||||||||| ||||| ||
Sbjct 65 TTTCTTCTTCTTCTTCTCTCTCTTTCCTCGG-TGGTTTTCTCCGATGATGCGTCTTTCCA 123
Query 177 GAAACTTCCGGTGCCTGACAAG-AGGTCAGGCCCTGAATCTTTCGCCTTTGACTCTACCG 235
||||||||||||||| || ||| ||||||||||||||| ||||||||||||| || ||||
Sbjct 124 GAAACTTCCGGTGCCGGA-AAGTAGGTCAGGCCCTGAAGCTTTCGCCTTTGATTCCACCG 182
Query 236 G---CGGATTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTACGTTCCTGGGAAGG 292
| || ||||||||||||||||||||||||||||||||||||||| |||| | || ||
Sbjct 183 GAAAAGGGTTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTACCTTCCCGAGACGG 242
Query 293 GTTATGTCGATTTTGCCCAGATCACAGATTCCTCGAACTCGGCATGGTGCAACGGAGC-A 351
|||||||||| |||||||||||||| || ||||||||||| |||||||| | ||| |
Sbjct 243 GTTATGTCGACTTTGCCCAGATCACTGAATCCTCGAACTCTTCATGGTGCGATGGAAATA 302
Query 352 TTAGGAACCGCTTTCGCCGGAA-AGTGTGGTCGACCAGCGGGAATAGCCTTAAAC-AGCA 409
|| ||||| ||||| || |||| | |||||| |||||||||||||||| || ||| || |
Sbjct 303 TT-GGAACGGCTTTAGCAGGAAGA-TGTGGTAGACCAGCGGGAATAGCGTTCAACGAG-A 359
Query 410 AAACAGGTGATCTCTATGTCGCCGATGCTCCGTTGGGTCTTCACGTTATCTCTCCCGCAG 469
|||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 360 AAACAGGTGATCTCTACGTCGCCGATGCACCGTTGGGTCTTCACGTTGTTTCTCCCGCAG 419
Query 470 GAGGTTTGGCCACAAAGCTGGCCGACAGTGTTGACGGAAAGCCTTTCAAGTTTCTTGACG 529
| |||||||| |||||| | ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 420 GTGGTTTGGCTACAAAGATCGCCGATAGTGTTGACGGAAAGCCTTTCAATTTTCTTGACG 479
Query 530 GTCTTGATGTTGATCCCACCACCGGCGTCGTCTACTTCACTTCCTTCAGTTCCAAGTTTG 589
||||||| ||||||||||| || || ||||| ||||||||||||||||| || | | ||
Sbjct 480 GTCTTGACGTTGATCCCACTACTGGTGTCGTTTACTTCACTTCCTTCAGCTC-ACGCTTC 538
Query 590 GACCCCGGG--AAGTGTTAATCGCAGTGGGATTAAAAGACGCGAGCGGAAAGCTGTTCAA 647
||||| ||||||| || ||| |||| ||||| ||||||| ||||||||| | |||
Sbjct 539 -ACCCCAATCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAA 597
Query 648 ATACGACCCAGCGACCAAAGCCGTGACTG-AGTTAATGGAAGGTCTAAGTGGTGCTGCTG 706
|||||||||| | ||||||| ||||| | | || |||||||| ||||||||| | || |
Sbjct 598 ATACGACCCATCAACCAAAGTTGTGACCGTA-TTGATGGAAGGGCTAAGTGGTTCAGCCG 656
Query 707 GTTGTGCAGTGAGCTCAGATGGTTCATTCGTGCTAGTTAG-CGAGTTCATAAAGAGTAAC 765
| |||||||||||||||||||||||||||||| | ||||| | |||||| ||||||||||
Sbjct 657 GGTGTGCAGTGAGCTCAGATGGTTCATTCGTGTTGGTTAGTC-AGTTCACAAAGAGTAAC 715
Query 766 ATCAAGAAATATTGGATTAAAGGGCCCAAA-GCTGGAACTAT-TGAAGACTTCTC-AAGT 822
||||||| |||||||| || ||| ||||| ||||| || | |||||||||| | || |
Sbjct 716 ATCAAGAGGTATTGGATCAA-GGGACCAAAAGCTGGTTCT-TCTGAAGACTTCACCAACT 773
Query 823 CTTGTCTCGAACCCCGACAACATCAGGAGGGTAGGTTCTACCGGAAATTTCTGGGTCGCC 882
| ||||| ||||| |||||||||| || | |||||||| |||||||| ||||||||
Sbjct 774 CG-GTCTCAAACCCTGACAACATCAAAAGAATTGGTTCTACTGGAAATTTTTGGGTCGCT 832
Query 883 TCTGTCGTGAACAAGGTTGTTATGCCTACCGA-CCC-T-AGGGCGGTCAAACTAGACGCT 939
|| || ||||||||| | | ||||||| || ||| | || | |||||| || || ||
Sbjct 833 TCCGTGGTGAACAAGATCATCGTGCCTAC-GAACCCATCAG--CAGTCAAAGTAAACTCT 889
Query 940 AATGGAAAAGTGCTCCAGACCATTT-TCCTCAA-GAATGAGTTTGG-GAATACTTTGCTT 996
|||| ||||||| ||||| || || |||| || | | ||||| || |||||||||
Sbjct 890 GATGGTGAAGTGCTTCAGACAATACCTC-TCAAAGA-TAAATTTGGAGAC-ACTTTGCTT 946
Query 997 AGTGAAGTCAACGAGTTCAACGGCCATCTTTACATCGGAACTCTTACTGGACC-TTTCGC 1055
|||||||||||||| ||| | ||| |||| || ||||||||||| || ||||| ||| ||
Sbjct 947 AGTGAAGTCAACGAATTCGAGGGCAATCTATATATCGGAACTCTCACAGGACCATTT-GC 1005
Query 1056 CGGA 1059
|||
Sbjct 1006 TGGA 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5