BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74020.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476542 jgi|Araly1|476542|fgenesh2_kg.2__1672__AT1G74020.1 1615 0.0
> Ahg476542 jgi|Araly1|476542|fgenesh2_kg.2__1672__AT1G74020.1
Length=1084
Score = 1615 bits (874), Expect = 0.0
Identities = 997/1058 (94%), Gaps = 2/1058 (0%)
Strand=Plus/Plus
Query 1 AAAGTCTCATTTGAGAATAATTGAGCGATAAAGAAACGGTATGACGTCGTTTTGCTCCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AAAGTCTCATTTGAGAATAATTGAGCGATAAAGAAACGGTATGACGTCGTTTTGCCCCAT 60
Query 61 GATttctcttcttcttcttctctctcttTCATCGGCGGTTTTCTCCGATGACGCTTCTTT 120
||||| |||||||||||||||||||||||| |||| ||||||||||||||| || |||||
Sbjct 61 GATTTTTCTTCTTCTTCTTCTCTCTCTTTCCTCGGTGGTTTTCTCCGATGATGCGTCTTT 120
Query 121 CCAGAAACTTCCGGTGCCGGAAACTAGGTCAGGTCCC-GAAGCTTTCGCTTTTGATTCCA 179
||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||
Sbjct 121 CCAGAAACTTCCGGTGCCGGAAAGTAGGTCAGG-CCCTGAAGCTTTCGCCTTTGATTCCA 179
Query 180 CCGGTAAAGGGTTCTATACCGGTGTCTCCGGTGGTAAAATCCTCAAGTACCTCCCCGAGA 239
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 180 CCGGAAAAGGGTTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTACCTTCCCGAGA 239
Query 240 CGGGTTATGTTGACTTTGCCCAGATCACTGAATCCTCGAACTCTTCATGGTGCGATGGTA 299
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 CGGGTTATGTCGACTTTGCCCAGATCACTGAATCCTCGAACTCTTCATGGTGCGATGGAA 299
Query 300 CTATTGGAACGGCTTTAGCCGGACGCTGTGGTCGACCAGCAGGAATAGCATTCAACGAGA 359
|||||||||||||||||| ||| | |||||| ||||||| |||||||| ||||||||||
Sbjct 300 ATATTGGAACGGCTTTAGCAGGAAGATGTGGTAGACCAGCGGGAATAGCGTTCAACGAGA 359
Query 360 AAACAGGTGATCTTTACGTCGCCGATGCTCCGTTGGGTCTTCACGTTATTTCTCCCGCCG 419
||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 360 AAACAGGTGATCTCTACGTCGCCGATGCACCGTTGGGTCTTCACGTTGTTTCTCCCGCAG 419
Query 420 GTGGTTTGGCTACGAAGATCACCGACAGTGTTGACGGAAAGCCTTTCAAGTTTCTTGACG 479
||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 420 GTGGTTTGGCTACAAAGATCGCCGATAGTGTTGACGGAAAGCCTTTCAATTTTCTTGACG 479
Query 480 GTCTTGACGTTGATCCCACTACTGGTGTCGTCTACTTCACTTCCTTCAGCTCACGCTTCT 539
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 GTCTTGACGTTGATCCCACTACTGGTGTCGTTTACTTCACTTCCTTCAGCTCACGCTTCA 539
Query 540 CCCCAATCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCCCAATCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAAT 599
Query 600 ACGACCCATCGACCAAAGTCGTGACTGTACTGATGGAAGGGCTAAGTGGTTCAGCCGGGT 659
|||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 600 ACGACCCATCAACCAAAGTTGTGACCGTATTGATGGAAGGGCTAAGTGGTTCAGCCGGGT 659
Query 660 GTGCAGTGAGCTCAGATGGTTCGTTTGTGCTGGTTAGTCAGTTCACAAAAAGTAACATCA 719
|||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||
Sbjct 660 GTGCAGTGAGCTCAGATGGTTCATTCGTGTTGGTTAGTCAGTTCACAAAGAGTAACATCA 719
Query 720 AGAGGTATTGGATCAAGGGACCCAAAGCTGGTTCTTCTGAAGACTTCACCAACTCAGTCT 779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 720 AGAGGTATTGGATCAAGGGACCAAAAGCTGGTTCTTCTGAAGACTTCACCAACTCGGTCT 779
Query 780 CAAACCCTGACAATATCAAAAGAATTGGCTCTACTGGAAACTTTTGGGTCGCTTCAGTGG 839
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 780 CAAACCCTGACAACATCAAAAGAATTGGTTCTACTGGAAATTTTTGGGTCGCTTCCGTGG 839
Query 840 TGAACAAGATCATCGTACCTACGAACCCATCAGCAGTCAAAGTTAACTCTAATGGTGAAG 899
|||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||
Sbjct 840 TGAACAAGATCATCGTGCCTACGAACCCATCAGCAGTCAAAGTAAACTCTGATGGTGAAG 899
Query 900 TTCTTCAAACAATTCCTCTCAAAGATAAATTTGGAGACACTCTGCTCAGCGAAGTCAACG 959
| ||||| ||||| ||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 900 TGCTTCAGACAATACCTCTCAAAGATAAATTTGGAGACACTTTGCTTAGTGAAGTCAACG 959
Query 960 AATTCGAGGGCAATTTATATATAGGAACTCTCACCGGACCATTTGCTGGAATTCTTAAGC 1019
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 960 AATTCGAGGGCAATCTATATATCGGAACTCTCACAGGACCATTTGCTGGAATTCTTAAGC 1019
Query 1020 TCGAAAAGGGTTCTTGTCCTGCCACTTAGATCTCTTAT 1057
||||||| |||||||| |||||||||||||||||||||
Sbjct 1020 TCGAAAATGGTTCTTGCCCTGCCACTTAGATCTCTTAT 1057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5