BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74045.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909031 jgi|Araly1|909031|Al_scaffold_0002_2112 974 0.0
> Ahg909031 jgi|Araly1|909031|Al_scaffold_0002_2112
Length=747
Score = 974 bits (527), Expect = 0.0
Identities = 609/649 (94%), Gaps = 4/649 (1%)
Strand=Plus/Plus
Query 2 TGTCTTCTTGCATCCGAGAAACCTCAAGCCAGTTCACGTTACTCGGTCTGCTTCTTCTGC 61
|||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 101 TGTCTTCTTGCATCCGAGAAACCTCAGGCCAGTTCTTGTTACTCGGTCTGATTCTTCTGT 160
Query 62 TGATTCCTCAGATCGGTCTATACGGAATCTGTTGCCGCTCCAAACGCCTTTTCAATT-TC 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 161 TGATTCCTCAGATAGGTCTATACGGAATCTGTTGCCGCTCCAAACGCCTTTTCAATTAT- 219
Query 121 TTCTTCTACGGCATGGTTGTGCTCATTATCATTGTATCTTATTATTCAATCAAATGTTCC 180
|||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 220 TTCTACTACGGCATGATTGTGGTCATTATCATTGTATCTTATTATTCAATCAAATGTTTC 279
Query 181 ATTTACAACACCACTTTTGGCATAGCTAAGAATCCCGCCAAGGACAACCGTACCGTGCCA 240
| ||||||||||||||||||||| ||||||| |||||||||||| |||| |||||||||
Sbjct 280 ACTTACAACACCACTTTTGGCATCCCTAAGAACCCCGCCAAGGACCACCGCACCGTGCCA 339
Query 241 CAGTTACTTGGTAGGTTGGTCTCTAAGGAGAAGTTCGAGAAAGTAACCTAT-TGTATCAT 299
|||||||| || || ||||||||||||||||||||||||| ||| || | ||||||||
Sbjct 340 CAGTTACTCGGCCGGCTGGTCTCTAAGGAGAAGTTCGAGAACGTAGTCT-TGTGTATCAT 398
Query 300 TCACAAACATGACTGTAATTACAATGCCAGCAAAAACAGCAATGTTTGGAAGTATTGCTG 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TCACAACCATGACTGTAATTACAATGCCAGCAAAAACAGCAATGTTTGGAAGTATTGCTG 458
Query 360 TGCACAACCGGTGGGATGTGGGACCATAACGATGTTCGACAAGCCAGGCGAGTGGAGTTG 419
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 459 TGCACAACCGCCGGGATGTGGGACCATTACGATGTTTGACAAGCCAGGCGAGTGGAGTTG 518
Query 420 GAAACATCAGTATGAACGGAACCAAGTTCCAGAAGAGTGTTCTTATGAGTATTGTTTAGA 479
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 519 GAAACAACAGTATGAACGGAACCAAGTTCCAGAAGAGTGTTCTTATGAATATTGTTTAGA 578
Query 480 TTGCAGAGGCTGCCAACTAAGCATCTTAAAAGCCATTGTTCATCAATGGAAATATCTCTC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TTGCAGAGGCTGCCAACTAAGCATCTTAAAAGCCATTGTTCATCAATGGAAATATCTCTC 638
Query 540 GATGTTTGCTTACCCTGCTCTAGTCCTTTCCTGCATCAGTCTTGCTATAGCTTGGTCTCT 599
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 639 AATGTTTGCTTACCCTGCTCTAGTCCTTTCCTGCATCAGTCTTGCCCTGGCTTGGTCTCT 698
Query 600 CAAGGAGACTATCCACGAAAACGAAGATTATCGAGGTTCTTATAGTTGA 648
|||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 699 CAAGGATACTATCCACGAAACCGAAGATTATCGAGGTTCTTATAGTTGA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5