BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74050.1
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476546 jgi|Araly1|476546|fgenesh2_kg.2__1676__AT1G74050.1 1520 0.0
Ahg476548 jgi|Araly1|476548|fgenesh2_kg.2__1678__AT1G74060.1 1146 0.0
Ahg920787 jgi|Araly1|920787|scaffold_102068.1 739 0.0
> Ahg476546 jgi|Araly1|476546|fgenesh2_kg.2__1676__AT1G74050.1
Length=1005
Score = 1520 bits (823), Expect = 0.0
Identities = 948/1008 (94%), Gaps = 9/1008 (1%)
Strand=Plus/Plus
Query 1 AAGAAAGCCCTAAAATTTAATTAGGGTTTCAGTGTCTTCAAATTCACCTATCCTCAGCCT 60
||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 1 AAGGAAGCCCTAAAATTAAATTAGGGTTTCAGTGTCTTCAAATTTACCAATCCTCCGCCT 60
Query 61 CAACTCTCTCCTCTATCCACTCTCAGCCGGAAAATTTTTCCTTGATTCATTACGACAGAG 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CAACTCTCTCCTCTATCCACTCTCAGCCGGAAAGTTTTTCCTTGATTCATTACGACAGAG 120
Query 121 AGAACCATGCCGGCGAAACAGAGGACCCCGAAGGTCAACAGAAACCCTGATCTGATCAGG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 121 AGAACCATGCCGGCGAAACAGAGGACGGCGAAGGTCAACAGAAACCCTGATCTGGTCAGG 180
Query 181 GGTGTTGGTAAATACTCGAGATCCCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAG 240
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GGAGTTGGTAAATACTCGAGATCTCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAG 240
Query 241 GCCAAAAATGGAGGCGTTTTCCCACGTCACGACGCTAAATCTAAGGTTGATGCTCCGGTG 300
||||||||||||||||||||||| || ||||||||||||||||||| |||| |||||| |
Sbjct 241 GCCAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGGTGATACTCCGGCG 300
Query 301 GAGAAGCCACCGAAGTTCTATCCAGCTGAAGATGTTAAGAAACCTCTCCCCAACAGGCGC 360
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 301 GAAAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGC 360
Query 361 ACGGCAAAACCAACCAAGCTCAGAGCTAGCATTACTCCAGGTACAGTGTTGATTATCCTT 420
||| ||||||| ||||||||||||||||||||||| ||||| |||||| ||||||| |||
Sbjct 361 ACGCCAAAACCTACCAAGCTCAGAGCTAGCATTACCCCAGGGACAGTGCTGATTATTCTT 420
Query 421 GCTGGTAGGTTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTTTGCTT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTGGTAGATTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTTTGCTT 480
Query 481 CTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGGCCTAT 540
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 481 CTTGTGACTGGACCATTCAAGGTTAATGGTGTTCCTTTGAGACGTGTGAACCAGGCCTAT 540
Query 541 GTGATTGGCACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTCGATGAT 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTCGATGAT 600
Query 601 AAGTACTTTGGCAAGGTTGCTgagaagaaaaagaagaagacagaaggagagttctttgag 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 AAGTACTTTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACAGAGGGAGAGTTCTTTGAG 660
Query 661 gctgagaaagaggagaagaaggagaTCCCACAGGTGAA-GAAAGATGACCAGAAAGCTGT 719
||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||| ||
Sbjct 661 GCTGAGAAAGAGGAGAAGAAGCAGATCCCACAGG-GAAAGAAAGATGATCAGAAAGCCGT 719
Query 720 GGATGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTTGGCGC 779
||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 720 GGACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGCTGAAGACTTACCTAGGCGC 779
Query 780 AAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTCATTACt 839
|||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||
Sbjct 780 AAGGTTTTCATTGAAACAAGGAATGAAGCCACATGAACTTGTTTTCTAGGTTTCATAACC 839
Query 840 ttttttCTGAGGTCTCTAGAGTATCTGTCTCCTGAAGTGTTTTACCTTCTAAATGGTTGT 899
|||||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 TTTTTT-TGAGTTTTCTAGAGTATCTGTGTCCTGAAGTGTTTTACCTTCTAAATGGTTGT 898
Query 900 TTTGTTCTTGTTCACTGAACA----CATACAATTTTTGGCTTATACATTCTCTGTTCTTA 955
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 899 TTTGTTCTTGTTCACTGACCAGAGACATACAATTTTTGGCTTATACATTCTCTGTTCTTA 958
Query 956 CGTATGGACAAACTATCGATCCTGTTTTTG-ATTGTGAGCTTTGTAGC 1002
|||||||| |||||||||||| |||||| | || |||||||||| |||
Sbjct 959 CGTATGGATAAACTATCGATCTTGTTTTCGGAT-GTGAGCTTTGAAGC 1005
> Ahg476548 jgi|Araly1|476548|fgenesh2_kg.2__1678__AT1G74060.1
Length=908
Score = 1146 bits (620), Expect = 0.0
Identities = 799/882 (91%), Gaps = 25/882 (3%)
Strand=Plus/Plus
Query 123 AACCATGCCGGCGAAACAGAGGACCCCGAAGGTCAACAGAAACCCTGATCTGATCAGGGG 182
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 33 AACCATGCCGGCGAAACAGAGGACACCTAAGGTCAACAGGAACCCTGATCTGATCAGGGG 92
Query 183 TGTTGGTAAATACTCGAGATCCCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAGGC 242
|||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 93 AGTTGGTAAATACTCAAGATCGCAGATGTACCATAAAAGAGGTTTGTGGGCAATCAAGGC 152
Query 243 CAAAAATGGAGGCGTTTTCCCACGTCACGACGCTAAATCTAAGGTTGATGCTCCGGTGGA 302
||||||||||||||||||||| || ||||| |||||||| |||||||||||||| | |||
Sbjct 153 CAAAAATGGAGGCGTTTTCCCCCGCCACGATGCTAAATCCAAGGTTGATGCTCCAGCGGA 212
Query 303 GAAGCCACCGAAGTTCTATCCAGCTGAAGATGTTAAGAAACCTCTCCCCAACAGGCGCAC 362
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 213 GAAACCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCAC 272
Query 363 GGCAAAACCAACCAAGCTCAG------AGCTAGCATTA-CTCCAGGTACAGTGTTGATTA 415
| ||||||||||||||||||| ||| ||||| | || |||| || ||||||||||
Sbjct 273 GCCAAAACCAACCAAGCTCAGATACTCAGCCAGCATCACCT-CAGGAACTGTGTTGATTA 331
Query 416 TCCTTGCTGGTAGGTTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTT 475
| |||||||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 332 TTCTTGCTGGTAGGTTCAAGGGAAAGAGAGTTGTTTTTCTTAAGCAGCTTCCCTCTGGTT 391
Query 476 TGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGG 451
Query 536 CCTATGTGATTGGCACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTCG 595
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 452 CCTATGTGATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAATTTCG 511
Query 596 ATGATAAGTACTTTGGCAAGGTTGCTgagaagaaaaagaagaagacagaaggagagttct 655
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 512 ATGATAAGTACTTTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACTGAAGGAGAGTTCT 571
Query 656 ttgaggctgagaaagaggagaagaaggagaTCCCACAGGTGAA-GAAAGATGACCAGAAA 714
| || ||||||||||||||||| |||||||| ||||| | ||| ||||||||||||||||
Sbjct 572 TCGAAGCTGAGAAAGAGGAGAAAAAGGAGATTCCACAAG-GAAAGAAAGATGACCAGAAA 630
Query 715 GCTGTGGATGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTT 774
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GCCGTGGACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTC 690
Query 775 GGCGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTCA 834
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 691 GGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTCTTCTAGATTTCA 750
Query 835 TTACtttttttCTGAGGTCTCTAGAGTATCTGTCTCCTGAAGTGTTTTAC-CTTCTAAAT 893
|||| ||||| ||||||| |||||||||||||||||||||| | |||||| || | ||||
Sbjct 751 TTACCTTTTT-CTGAGGTTTCTAGAGTATCTGTCTCCTGAAAT-TTTTACACTCC-AAAT 807
Query 894 GGTTGTTT-TGTTCTTGTTCACTGAACACATACA-AT-TTTTGGCTTA--TA-C---ATT 944
||||| | |||||| || |||||| || | ||| | |||||||| | || | |||
Sbjct 808 GGTTGGGTCTGTTCTCGTCCACTGACCAGAGACATAAATTTTGGCTCAACTATCTGGATT 867
Query 945 CTCTGTTCTTACGTATGGACAAACTATCGATCCTGTTTTTGA 986
|||||| |||| |||||| || |||| ||| |||||||||
Sbjct 868 -TCTGTT-TTACATATGGATAATTTATCAATCTTGTTTTTGA 907
> Ahg920787 jgi|Araly1|920787|scaffold_102068.1
Length=833
Score = 739 bits (400), Expect = 0.0
Identities = 606/707 (86%), Gaps = 8/707 (1%)
Strand=Plus/Plus
Query 131 CGGCGAAACAGAGGACCCCGAAGGTCAACAGAAACCCTGATCTGATCAGGGGTGTTGGTA 190
||||||| |||||||| ||||| || ||| | |||||||| || |||||||| || || |
Sbjct 28 CGGCGAAGCAGAGGACTCCGAAAGTTAACCGTAACCCTGACCTAATCAGGGGGGTCGGCA 87
Query 191 AATACTCGAGATCCCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAGGCCAAAAATG 250
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 88 AATACTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGGCTATCAAGGCCAAAAACG 147
Query 251 GAGGCGTTTTCCCACGTCACGACGCTAAATCTAAGGTTGATGCTCCGGTGGAGAAGCCA- 309
| ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 148 GCGGCGTTTTCCCTCGTCACGATGCTAAGTCTAAGGTCGATGCTCCGGTGGAGAAGCCTG 207
Query 310 CCGAAGTTCTATCCAGCTGAAGATGTTAAGAAACCTCTCCCCAACAGGCGCACGGCAAAA 369
|| ||||| ||||| || ||||| |||||||| || ||| ||||| |||| | | ||
Sbjct 208 CC-AAGTTTTATCCGGCGGAAGACGTTAAGAAGCCGCTCGTTAACAGACGCAAGCCTAAG 266
Query 370 CCAACCAAGCTCAGAGCTAGCATTACTCCAGGTACAGTGTTGATTATCCTTGCTGGTAGG 429
|| |||||||| | | | ||||| |||||||| || |||||||| || |||||||||||
Sbjct 267 CCTACCAAGCTAAAATCAAGCATCACTCCAGGAACTGTGTTGATCATTCTTGCTGGTAGA 326
Query 430 TTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCT-CTGGTTTGCTTCTTGTGAC 488
|||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||| ||
Sbjct 327 TTCAAGGGAAAGAGAGTTGTCTTCCTCAAGCAACTT-CCTTCTGGTTTGCTTCTTGTAAC 385
Query 489 TGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGGCCTATGTGATTGG 548
||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 386 AGGACCATTCAAGATCAATGGTGTGCCATTGAGACGTGTTAACCAAGCCTATGTGATTGG 445
Query 549 CACTTCCACAAAGGTTGACATTTCTGGAGTCACC-CTCGATAAATTCGATGATAAGTACT 607
|| |||||||||||||||||||||||||||| | || || ||||||||||| ||||| |
Sbjct 446 AACCTCCACAAAGGTTGACATTTCTGGAGTCAACACT-GAGAAATTCGATGACAAGTATT 504
Query 608 TTGGCAAGGTTGCTgagaagaaaaagaagaa-gacagaaggagagttctttgaggctgag 666
|||| ||||||||||||||||| |||||||| | |||||| || ||||| || ||||||
Sbjct 505 TTGGAAAGGTTGCTGAGAAGAAGAAGAAGAAAGG-AGAAGGCGAATTCTTCGAAGCTGAG 563
Query 667 aaagaggagaagaaggagaTCCCACAGGTGAAGAAAGATGACCAGAAAGCTGTGGATGCA 726
|||||||||||||| ||||||||||||| |||||| || ||||||||| | || || ||
Sbjct 564 AAAGAGGAGAAGAAAGAGATCCCACAGGAGAAGAAGGAAGACCAGAAAACCGTTGACGCT 623
Query 727 GCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTTGGCGCAAGGTTT 786
||| |||||||| ||| || | ||| |||||| | ||| ||||||||| || |||||
Sbjct 624 GCTCTGATCAAATTCATCGAGGTAGTCCCAGAGCTCAAGGTTTACCTTGGAGCCAGGTTC 683
Query 787 TCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTC 833
||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 684 TCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAGATTTC 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5