BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74055.1
Length=583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476547 jgi|Araly1|476547|fgenesh2_kg.2__1677__AT1G74055.1 739 0.0
> Ahg476547 jgi|Araly1|476547|fgenesh2_kg.2__1677__AT1G74055.1
Length=544
Score = 739 bits (400), Expect = 0.0
Identities = 499/547 (91%), Gaps = 6/547 (1%)
Strand=Plus/Plus
Query 4 AAATATTGAATCTTGATCACCGAAAACCAAAATTTCATTAGATTC-AATGGCTATGGCTA 62
|||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||
Sbjct 1 AAATATTGAATCTTGATCTCCGAAAACCAAAACATCATTAGA-TCTAATGGCTATGGCTA 59
Query 63 GTAGTAGTAGCAGCTCGTCATTGTTTCCTATCCAACAACAACCTCAACAACAATTAGGAG 122
|||||||||||| |||||| |||||||||| |||||||||||| ||||| ||||||||||
Sbjct 60 GTAGTAGTAGCAACTCGTCGTTGTTTCCTACCCAACAACAACCGCAACAGCAATTAGGAG 119
Query 123 GCAATGAGAT-CACACCTATGGCTACCAATGCCAATCTAATCGCAGCACCAAACGCTCCA 181
|||||||| | || ||||| ||||||||| | ||||||||| ||||||||||||||||||
Sbjct 120 GCAATGAGTTCCA-ACCTACGGCTACCAACGTCAATCTAATTGCAGCACCAAACGCTCCA 178
Query 182 AACCATTACTCTTCCAGCTCCATTGGACCCTTCTTCGCTGTCATATCTGTTCTCATCATT 241
||||||||||||||| ||||||||||||||||||| || ||||| ||||||||| || ||
Sbjct 179 AACCATTACTCTTCCGGCTCCATTGGACCCTTCTTTGCAGTCATCTCTGTTCTCGTCGTT 238
Query 242 CTTGCTGTTCTCTCCTGCTTCTTGGGTCG-ATTCTGCGCACGGAGCCGCCAGAGAACTGG 300
||||| || |||||||||||||||||||| || || |||||| |||||||||||||||
Sbjct 239 CTTGCAGTCCTCTCCTGCTTCTTGGGTCGCATA-TGTGCACGGCGCCGCCAGAGAACTGT 297
Query 301 TCTAGTGGCTGAAGTCAATCCGTTGGAGATGATAAAGAGTGGTGGGCTTTTAGGTTGGCT 360
| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 298 TTTAGTGGCAGAAGTCAATCCATTGGAGATGATAAAGAGTGGTGGGCTTTTAGGATGGCT 357
Query 361 GAGACGAAAATGGAGACGGTGTTTGGCCGGAGATGTTGAGGCCGGAGCTAAAGTTGCTGA 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 358 GAGACGAAAATGGAGACGGTGTTTGGCTGGAGATGTTGAGGCCGGAGCTAAAGTTGCCGA 417
Query 421 TTGTGCTAGCAAAGAAACACCTAAAGATAATGATCAAATTCGTCTAGAAGCACCTCCAGC 480
|||||| ||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 418 TTGTGCCAGCAAAGAAACACCTAAAGATAATGATCAAACTCGCCTTGAAGCACCTCCAGC 477
Query 481 TTGATCTCGGTGCATGTGACAGAGACTAGTAATAAGAGTTTCAATATTCGAAGTAGATTG 540
||||||| ||||| |||| ||||||||||||||||||| |||| |||||||||||| ||
Sbjct 478 TTGATCTAGGTGCGTGTGTGAGAGACTAGTAATAAGAGTATCAACATTCGAAGTAGAATG 537
Query 541 TAAGCTA 547
|||||||
Sbjct 538 TAAGCTA 544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21328974251
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5