BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74060.1
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476548 jgi|Araly1|476548|fgenesh2_kg.2__1678__AT1G74060.1 1264 0.0
Ahg476546 jgi|Araly1|476546|fgenesh2_kg.2__1676__AT1G74050.1 1155 0.0
> Ahg476548 jgi|Araly1|476548|fgenesh2_kg.2__1678__AT1G74060.1
Length=908
Score = 1264 bits (684), Expect = 0.0
Identities = 819/882 (93%), Gaps = 18/882 (2%)
Strand=Plus/Plus
Query 72 AACGATGCCGGCGAAACAGAGGACAGCTAAGGTCAACAGGAATCCTGATCTGATCAGGGG 131
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 33 AACCATGCCGGCGAAACAGAGGACACCTAAGGTCAACAGGAACCCTGATCTGATCAGGGG 92
Query 132 AGTTGGTAAATACTCAAGGTCTCAGATGTACCATAAGAGAGGTTTGTGGGCAATCAAGGC 191
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 93 AGTTGGTAAATACTCAAGATCGCAGATGTACCATAAAAGAGGTTTGTGGGCAATCAAGGC 152
Query 192 CAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGTTGATGCTCCGGTGGA 251
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||
Sbjct 153 CAAAAATGGAGGCGTTTTCCCCCGCCACGATGCTAAATCCAAGGTTGATGCTCCAGCGGA 212
Query 252 GAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCAC 311
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 GAAACCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCAC 272
Query 312 GGCAAAACCAGCCAAGCTCAG------AGCTAGCATCA-CTCCAGGGACAGTGCTT-ATC 363
| |||||||| |||||||||| ||| ||||||| || |||| || ||| || ||
Sbjct 273 GCCAAAACCAACCAAGCTCAGATACTCAGCCAGCATCACCT-CAGGAACTGTG-TTGATT 330
Query 364 ATCCTTGCTGGTAGATTTAAGGGCAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCCGGT 423
|| ||||||||||| || ||||| ||||||||||| || |||||||||||| |||| |||
Sbjct 331 ATTCTTGCTGGTAGGTTCAAGGGAAAGAGAGTTGTTTTTCTTAAGCAGCTTCCCTCTGGT 390
Query 424 TTGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTCTGAGACGTGTTAACCAG 483
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 391 TTGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAG 450
Query 484 GCCTATGTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTTACCCTCGACAAATTC 543
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 451 GCCTATGTGATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAATTTC 510
Query 544 GATGATAAGTACTTCGGCAAGGTTGCTgagaagaaaaagaagaagactgaaggagagttc 603
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GATGATAAGTACTTTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACTGAAGGAGAGTTC 570
Query 604 ttcgaggctgagaaagaggagaagaaa-gagaTTCCACAGGGAAAGAAAGATGACCAGAA 662
||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 571 TTCGAAGCTGAGAAAGAGGAGAA-AAAGGAGATTCCACAAGGAAAGAAAGATGACCAGAA 629
Query 663 AGCCGTGGACGCAGCTTTGATCAAAGCTATTGAAGCAGTTCCAGAGTTGAAGACTTACCT 722
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 630 AGCCGTGGACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCT 689
Query 723 CGGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTC 782
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 690 CGGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTCTTCTAGATTTC 749
Query 783 ATTACtttttttCTGAGGTTTCTAGTGTATCTGTCTCCTGAAGTTTT-ACACTCCAACTG 841
||||| ||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||
Sbjct 750 ATTACCTTTTT-CTGAGGTTTCTAGAGTATCTGTCTCCTGAAATTTTTACACTCCAAATG 808
Query 842 GTTGGTTCTGTTCTCGTCCACTGACCAGAGACATAAAATCTTGGCTGCTGCTATCTGGAT 901
||||| ||||||||||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct 809 GTTGGGTCTGTTCTCGTCCACTGACCAGAGACATAAATT-TTGGCT-CAACTATCTGGAT 866
Query 902 TTCTGTCTTA--TATGGATAATTTATCAATCCTGTTTTTGAA 941
|||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 867 TTCTGTTTTACATATGGATAATTTATCAATCTTGTTTTTGAA 908
> Ahg476546 jgi|Araly1|476546|fgenesh2_kg.2__1676__AT1G74050.1
Length=1005
Score = 1155 bits (625), Expect = 0.0
Identities = 801/883 (91%), Gaps = 23/883 (3%)
Strand=Plus/Plus
Query 65 AGAAAGTAACGATGCCGGCGAAACAGAGGACAGCTAAGGTCAACAGGAATCCTGATCTGA 124
||| || ||| |||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 117 AGAGAG-AACCATGCCGGCGAAACAGAGGACGGCGAAGGTCAACAGAAACCCTGATCTGG 175
Query 125 TCAGGGGAGTTGGTAAATACTCAAGGTCTCAGATGTACCATAAGAGAGGTTTGTGGGCAA 184
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 176 TCAGGGGAGTTGGTAAATACTCGAGATCTCAGATGTACCATAAGAGAGGTTTGTGGGCTA 235
Query 185 TCAAGGCCAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGTTGATGCTC 244
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 236 TCAAGGCCAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGGTGATACTC 295
Query 245 CGGTGGAGAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACA 304
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CGGCGGAAAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACA 355
Query 305 GGCGCACGGCAAAACC-AGCCAAGCTCAGAGCTAGCATCACTCCAGGGACAGTGCTTATC 363
|||||||| ||||||| | ||||||||||||||||||| || |||||||||||||| ||
Sbjct 356 GGCGCACGCCAAAACCTA-CCAAGCTCAGAGCTAGCATTACCCCAGGGACAGTGCTGATT 414
Query 364 ATCCTTGCTGGTAGATTTAAGGGCAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCCGGT 423
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 415 ATTCTTGCTGGTAGATTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGT 474
Query 424 TTGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTCTGAGACGTGTTAACCAG 483
||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||
Sbjct 475 TTGCTTCTTGTGACTGGACCATTCAAGGTTAATGGTGTTCCTTTGAGACGTGTGAACCAG 534
Query 484 GCCTATGTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTTACCCTCGACAAATTC 543
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 535 GCCTATGTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTC 594
Query 544 GATGATAAGTACTTCGGCAAGGTTGCTgagaagaaaaagaagaagactgaaggagagttc 603
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 595 GATGATAAGTACTTTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACAGAGGGAGAGTTC 654
Query 604 ttcgaggctgagaaagaggagaagaaag-agaTTCCACAGGGAAAGAAAGATGACCAGAA 662
|| ||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||
Sbjct 655 TTTGAGGCTGAGAAAGAGGAGAAGAA-GCAGATCCCACAGGGAAAGAAAGATGATCAGAA 713
Query 663 AGCCGTGGACGCAGCTTTGATCAAAGCTATTGAAGCAGTTCCAGAGTTGAAGACTTACCT 722
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 714 AGCCGTGGACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGCTGAAGACTTACCT 773
Query 723 CGGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTC 782
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 774 AGGCGCAAGGTTTTCATTGAAACAAGGAATGAAGCCACATGAACTTGTTTTCTAGGTTTC 833
Query 783 ATTACtttttttCTGAGGTTTCTAGTGTATCTGTCTCCTGAAGT-TTT-ACACTCC-AAC 839
|| || |||||| |||| ||||||| |||||||| ||||||||| ||| || || | ||
Sbjct 834 ATAACCTTTTTT-TGAGTTTTCTAGAGTATCTGTGTCCTGAAGTGTTTTAC-CTTCTAAA 891
Query 840 TGGTTGGTTCTGTTCTCGTCCACTGACCAGAGACATAAAATCTT-GGCTGCTGCTATCTG 898
|||||| || |||||| || ||||||||||||||||| ||| || |||| | || |
Sbjct 892 TGGTTGTTT-TGTTCTTGTTCACTGACCAGAGACATACAATTTTTGGCT--TA-TA-C-- 944
Query 899 GATT-TCTGT-CTTA--TATGGATAATTTATCAATCCTGTTTT 937
||| ||||| |||| ||||||||| |||| ||| ||||||
Sbjct 945 -ATTCTCTGTTCTTACGTATGGATAAACTATCGATCTTGTTTT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36293016984
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5