BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74070.1
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476549 jgi|Araly1|476549|fgenesh2_kg.2__1679__AT1G74070.1 1746 0.0
> Ahg476549 jgi|Araly1|476549|fgenesh2_kg.2__1679__AT1G74070.1
Length=1284
Score = 1746 bits (945), Expect = 0.0
Identities = 1138/1228 (93%), Gaps = 25/1228 (2%)
Strand=Plus/Plus
Query 1 ACGTTTGTGTGACATGAAAT--G-AAACGGCTAACTTTCGATTCCTTATCCACGAAATCT 57
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 ACGTTTGTGTGACATGAAATGGGTGAACGGCTAACTTTCGATTCCTTATCCACGAAATCT 60
Query 58 AGTTAATTATCTATCTCCCTCCACCAATGATGACAC--A--CAGT-TTCATCAGGTAGAC 112
|| ||||||||||||| ||||||||||||| ||||| | || | ||||||||||||||
Sbjct 61 AG-TAATTATCTATCTTCCTCCACCAATGA-GACACAGATTCA-TATTCATCAGGTAGAC 117
Query 113 AAAATGATGC-A--ACCCAATGCAAAACTTTTGTCCCCATCCGCTAAATTTCTACCGTCA 169
|||||||||| | |||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 118 AAAATGATGCTACCACCCAATGCAAAACTTTTGTCCTCATCCGCAAAATTTCTACCGTCG 177
Query 170 CCTATAGAGCCACCGCAACACAACCGTAGAACCACCGTAGGAGCAC-CTCCGTCATTGGA 228
||| |||||||||||||||||| |||||||| | ||| |||||| | ||||||| |||||
Sbjct 178 CCTGTAGAGCCACCGCAACACAGCCGTAGAATCGCCGGAGGAGC-CTCTCCGTCGTTGGA 236
Query 229 ACGAAACTGCAAATTATCGCGACGGAATCTTAGTAAATCCTCGTTGCTTCTACTCCTCAC 288
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 237 ACGAAACTGCAAATTATCGCGACGGAATCTAAGTAAATCCTCGTTGCTTCTACTCCTTAC 296
Query 289 CACTCAAACAACTCTGACGCCATTGCTCGACTTCTCTAAAGCTCAAGCAGATACAATTGC 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TACTCAAACAACTCTGACGCCATTGCTCGACTTCTCTAAAGCTCAAGCAGATACAATTGA 356
Query 349 TAACCCTAATCTCACAAATTGCGAAAACAGAATTCCGACTAAGAAAGCGTTCATCGACGT 408
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TAATCCTAATCCCACAAATTGCGAAAACAGAATTCCGACTAAGAAAGCGTTCATCGACGT 416
Query 409 GTCAATCGACGGCGAACCAATCGGGAGGATCATAATCGGATTATACGGAGACGATGTACC 468
|| |||||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||
Sbjct 417 ATCGATCGACGGAGAACCAATCGGAAGGATCGTAATCGGATTATACGGAGACGATGTGCC 476
Query 469 GGCGGGAACAGCTAGATTCAGTAGCATTGTAAGCGGGAAAGCTGGAATTACTTACCGGAG 528
||||||||||||||| ||||| |||||||||||||||||||| ||||| | |||||||||
Sbjct 477 GGCGGGAACAGCTAGGTTCAGCAGCATTGTAAGCGGGAAAGCCGGAATAAGTTACCGGAG 536
Query 529 AAAAGATTTTGTGAAGATTATGCCAGGTTATGTCCAACACGGCGGAATTAGATCGTACGG 588
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AAAAGATTTTGTGAAGATCATGCCAGGTTATGTCCAACACGGCGGAATTAGATCGTACGG 596
Query 589 TGTCGATGCCGAGCGTGCCACCGCCGCGGTGGGGAGTCTCCAAAACCTAATTGAagagtg 648
||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 597 AGTCGACGCCGAGCGAGCCACCGCCGCGGTCGGGAGTCTTCAAAACCTAATTGAAGAGTG 656
Query 649 ggagagagggaagagaggagagaTATGTAATGTAAATAAGGCGGGAAGCGTTGGAATCGT 708
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 657 GGAGAGAGGGAAGAGAGGAGAGATATGCAATGTAAATAAGGCGGGAAGTGTTGGAATCGT 716
Query 709 GGTGAGAGATCCGTCGAAACCGCCGCCGAAGACGAAGCTTGTGGCAAGGAATGGGAAGCT 768
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 717 GGTGAGAGATCCGTCGAAGCCGCCGCCGAAGACGAAGCTTGTGGCGAGGAATGGGAAGCT 776
Query 769 TGTGGTCGAAGAAGAGGTAATTGCGGTGGGGCCAAACGGAACGGAGTTTGTTATAACGGC 828
| ||| ||||||||||| || || || || || ||||||||||||||||||||||| ||
Sbjct 777 TCAGGTGGAAGAAGAGGTTATAGCCGTAGGACCGAACGGAACGGAGTTTGTTATAACTGC 836
Query 829 GGTTGATTCGCCGGAGCTGGAGGATTCGGTTTTGGTGATTGGGAAAGTTTTGGAAGGAAT 888
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 GGTTGATTCGCCGGAGCTGGAGGATTCGGTTTTGGTGATTGGGAAGGTTTTGGAAGGAAT 896
Query 889 GGGAGTTGTTGAGAAGATGAGAGAAGTGAAGACTGTGAGGGATAACACTTCATCTCCTTA 948
||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 897 GGGAGTTGTGGAGAAGATGAGACAAGTGAAGACTGTTAGGGATAACACTTCATCTCCTTA 956
Query 949 TTTCAGGGTGGCTAAAGTGATCGGAGATAAGAGAGCTGTGGTGGCGGAGAGAGGGTTTAA 1008
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTTCAGAGTGGCTAAAGTGATCGGAGATAAGAGAGCTGTGGTGGCGGAGAGAGGGTTTAA 1016
Query 1009 CCGGCCTTATTCTAAGGTTGTAGTCACCAATTGTGGTTTGATCGAGTCACAAACTCTATG 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCGGCCTTATTCTAAGGTTGTAGTCACCAATTGTGGTTTGATCGAGTCACAAACTCTATG 1076
Query 1069 AATGAGCTCATTGTTTGTTGGCAACGTTTTTTGTGTGCTATG-CAAGACAACTTAAACTG 1127
|||||||||| |||||||||||||||||||| | || | | ||| ||| ||| |||||
Sbjct 1077 AATGAGCTCAC-GTTTGTTGGCAACGTTTTTTTTTTGGTGTAACAA-ACAGCTTCAACTG 1134
Query 1128 TTAAGCACATCAACCACATGGAAA-GATTGCAGCCATGGTG--G-T--TTGGTGGAACTA 1181
|| ||||||||||||||||||||| |||||||||||||||| | | || |||||||||
Sbjct 1135 TTTAGCACATCAACCACATGGAAAAGATTGCAGCCATGGTGATGGTGGTTTGTGGAACTA 1194
Query 1182 CATTATCAATTGAGTAATTATAAGCGTG 1209
|||||||||||||| |||||||||||||
Sbjct 1195 CATTATCAATTGAGAAATTATAAGCGTG 1222
Score = 99.0 bits (53), Expect = 8e-20
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 1269 GCTTGGGCCTTAACTGGATATTAAAGAGT-GTAATAAACAATTTCTACTATTTCTATTTG 1327
||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 1223 GCTTGGGCCTTAACTGGATATTAAAGAGTTG-AATAAACAAATTCTACTATTTCTATTTG 1281
Query 1328 CCC 1330
|||
Sbjct 1282 CCC 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49750406685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5