BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74080.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476550 jgi|Araly1|476550|fgenesh2_kg.2__1680__AT1G74080.1 1480 0.0
> Ahg476550 jgi|Araly1|476550|fgenesh2_kg.2__1680__AT1G74080.1
Length=1221
Score = 1480 bits (801), Expect = 0.0
Identities = 1076/1201 (90%), Gaps = 49/1201 (4%)
Strand=Plus/Plus
Query 146 CTTAATGTTCTTACCAAAAGATCTAGTCCTTTCTTTGTATGATCGATCCATCACAAGCCC 205
||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 57 CTTCATGTTTTTATCAAAAGATCTAGTCCTTTCGTTGTATGATCGATCCATCACAAGCCC 116
Query 206 ACAACAACAACA----ACTA-CATCTCTTTCTCTATCTCTAGCTTCTATTATTAATACAT 260
|||| ||||||| ||| | |||||||||| | ||||||||| |||||||||||||
Sbjct 117 ACAAGAACAACATTTCTCTATC-TCTCTTTCTCGA--TCTAGCTTCAATTATTAATACAT 173
Query 261 TCAAGAATCAAGAATGGTACGGACGCCGTGTTGTAGAGCAGAAGGGTTGAAGAAAGGAGC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCAAGAATCAAGAATGGTACGGACGCCGTGTTGTAGAGCAGAAGGGTTGAAGAAAGGAGC 233
Query 321 ATGGACTCAAGAAGAAGACCAAAAGCTTATCGCCTATGTTCAACGACATGGTGAAGGCGG 380
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 234 ATGGACTCAAGAAGAAGACCAAAAACTCATCGCCTATGTTCAACGACACGGTGAAGGCGG 293
Query 381 TTGGCGAACCCTTCCGGACAAAGCTGGACTCAAAAGATGTGGCAAAAGCTGCAGATTGAG 440
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTGGCGAACCCTTCCGGATAAAGCTGGACTCAAAAGATGTGGCAAAAGCTGCAGATTGAG 353
Query 441 ATGGGCGAATTACTTAAGACCTGACATTAAACGTGGAGAGTTTAGCCAAGACGAGGAAGA 500
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 354 ATGGGCGAATTACCTAAGACCTGACATTAAACGTGGAGAGTTTAGCCAAGAGGAGGAAGA 413
Query 501 TTCCATCATCAACCTCCACGCCATTCATGGCAACAAATGGTCGGCCATAGCTCGTAAAAT 560
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 414 TTCCATCATCAACCTCCATGCCATTCATGGCAACAAATGGTCGGCCATAGCTCGTAAATT 473
Query 561 ACCAAGAAGAACAGACAATGAGATCAAGAACCATTGGAACACTCACATCAAGAAATGTCT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 474 ACCAAGAAGAACAGACAATGAGATCAAGAACCATTGGAACACTCACATCAAGAAACGTCT 533
Query 621 GGTCAAGAAAGGTATTGATCCGTTGACCCACAAATCCCTTC-TCGATGGAGCCGGTAAAT 679
||||||||||||||| ||||||||||||||||||| ||||| | ||||| ||| ||||||
Sbjct 534 GGTCAAGAAAGGTATCGATCCGTTGACCCACAAATTCCTTCAT-GATGGTGCCAGTAAAT 592
Query 680 CATCTGACCATTCCG---C---GCATCCCGAGAAAAGCAGCGTTCATGACGACAAAGATG 733
|||||||| || ||| | |||||| |||||||||||| ||| | |||| ||||||
Sbjct 593 CATCTGACTATCCCGAGACACCGCATCCAGAGAAAAGCAGCTTTCGTCACGAGGAAGATG 652
Query 734 ATCAGAATTCAAATAACAAAAAGTTGTCAGGATCATCATCAGCTCGGTTTTTGAACAGAG 793
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 653 ATCAGAATTCAAATAACAAAAAGTCGTCAGGATCATCATCAGCTCGGTTTTTGAACAGAG 712
Query 794 TAGCAAACAGATTCGGTCATAGAATCAACCACAATGTTCTGTCTGATATTATTGGAAGTA 853
|||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 713 TAGCTAACAGATTTGGTCACAGAATCAACCACAATGTTCTGTCTAATATTATTGGAAGTA 772
Query 854 ATGGCCTACTTACTAGTCACACTACTCCAACTACAAGTGTTTCAGAAG-GTGAGAGGTCA 912
| ||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||
Sbjct 773 GTAGCCTACTTACTAGTCACACTACTCCTACTACAAGTGTTTCAGA-GCGTGAGAGATCA 831
Query 913 ACGAGTTCTTCCTCCACACATACCTCTTCGAATCTCCCCATCAACCGTAGCATAACCGTT 972
| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||
Sbjct 832 AATAGTTCTTCCTCCACACCTACCTCTTCGAATCTCCCCATGTACCAAAGCATAACCGTT 891
Query 973 GATGCAACATCTCTATCCTCATCCACGTTCTCTGACTCCCCCGACCCGTGTTTATACGAG 1032
|||||||||||| | ||||| |||||||||||||||||| | || |||| ||| |||||
Sbjct 892 GATGCAACATCTTTGTCCTCGTCCACGTTCTCTGACTCCTCGGATCCGTTTTTGTACGAC 951
Query 1033 GAAATAGTCGGTGACATTGAAGATATGACGAGATTTTCATCAAGATGTTTGAGTCATGTT 1092
|| || |||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 952 GATATCTTCGGTGACATTGAAGATATGACGAGATTTTCATCGAGATGTTTGAGTGATGTT 1011
Query 1093 TTATCTCATGAAGATTTATTGATGTCCGTTGAGTCTTGTTTGGAGAATACTTCATTCATG 1152
||||||| || ||| | || || | |||| | || | | |||
Sbjct 1012 CTATCTCACGATGATGAA--GA-GTTC-TTGA-T---GT----------C--CG---ATG 1048
Query 1153 AGGGAAATTACAATGATCTTTCAAGAGGATAAAATCGAGACGACGTCGTTTAATGATAGC 1212
||| || || |||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1049 AGG-AACTTGCAATGATCTTTCGAGAGGATAAAACCGAGACGACGTCGTTTAATGATAGC 1107
Query 1213 TACGTGACGCCGATCAATGAAGTTGATGACTCCTGTGAAGGGATTGACAATTATTTTGGA 1272
||| || || ||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1108 CACGCGAAGCTGATCAATGAAGTTGATGACTCCTTTGAAGGGATTGACAATTATATTGGA 1167
Query 1273 TGAGTTATATTGATGATGATGAAAATTTGCATTTGGCATGTAAATCAATTAGAGTTTGAT 1332
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1168 TGAGT-ATATTGATGATGATGAAAATTTG-----G-CATGTAAATCAATTAGAGTTTGAT 1220
Query 1333 T 1333
|
Sbjct 1221 T 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5