BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G74088.2

Length=666
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476551 jgi|Araly1|476551|fgenesh2_kg.2__1681__AT1G74088.1         379    1e-104
  Ahg312807 jgi|Araly1|312807|fgenesh1_pm.C_scaffold_1001587          67.6    1e-10 


> Ahg476551 jgi|Araly1|476551|fgenesh2_kg.2__1681__AT1G74088.1
Length=793

 Score =  379 bits (205),  Expect = 1e-104
 Identities = 236/250 (94%), Gaps = 5/250 (2%)
 Strand=Plus/Plus

Query  422  CGGGAAGTAAAAACCTTACTGGGACAGGTACACTCGAGCCATTCTTATTTGCAAGATTGT  481
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  542  CGGGAAGTATAAACCTTACTGGGACAGGTACACTCGAGCCATTCTTATTTGCAAGATTGC  601

Query  482  ATCACAGCTTAAAGCACTTGAAGAGTTTG--TT-TTCTTCATCAAGTCATTACGAAAATA  538
            ||||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||
Sbjct  602  ATCACAGCTTAAAACACTTGAAGAGTTTGTTTTCTTCTTCATCAAGTCATTACGAAAATA  661

Query  539  GATATCTAGATACTTACTTAATCAGGTTGAATCTTGTACATTA-A-ATTGTAGACCTTAT  596
            |||||||||||||||||||| |||||||||||||| | ||||| | |||||||| |||| 
Sbjct  662  GATATCTAGATACTTACTTAGTCAGGTTGAATCTTATGCATTATATATTGTAGATCTTAG  721

Query  597  AACAGCAGCAGATTCAGATTTCTGCAAGTGAAGAGTGTAGTTTATAGTTGAATAGATTAC  656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  722  AACAGCAGCAGATTCAGATTTCTGCAAGTGAAGAGTGTAGTTTATAGTTGAATAGATTAC  781

Query  657  AGATAAGAGC  666
            ||| ||||||
Sbjct  782  AGAGAAGAGC  791


 Score =  111 bits (60),  Expect = 5e-24
 Identities = 65/67 (97%), Gaps = 1/67 (1%)
 Strand=Plus/Plus

Query  356  AGAGCCGTCTCTTCAGGAGCTAGTGGATGAGAACATAAACTCAACTAGACCCGTTGACAA  415
            ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  452  AGA-CCGTCTCTTCAGGAGCTAGTGGATGAGAACATAAACTCAACTAGACTCGTTGACAA  510

Query  416  CAACCTC  422
            |||||||
Sbjct  511  CAACCTC  517


> Ahg312807 jgi|Araly1|312807|fgenesh1_pm.C_scaffold_1001587
Length=1617

 Score = 67.6 bits (36),  Expect = 1e-10
 Identities = 43/46 (93%), Gaps = 1/46 (2%)
 Strand=Plus/Plus

Query  210  TACAACCTAGCCACCACAATGATGACCATGAAATCTCACATC-AAG  254
            ||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct  457  TACGACATAGCCACCACAATGATGACCATGAAATCTCACATCCAAG  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24436789797


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5