BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G74088.2 Length=666 Score E Sequences producing significant alignments: (Bits) Value Ahg476551 jgi|Araly1|476551|fgenesh2_kg.2__1681__AT1G74088.1 379 1e-104 Ahg312807 jgi|Araly1|312807|fgenesh1_pm.C_scaffold_1001587 67.6 1e-10 > Ahg476551 jgi|Araly1|476551|fgenesh2_kg.2__1681__AT1G74088.1 Length=793 Score = 379 bits (205), Expect = 1e-104 Identities = 236/250 (94%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 422 CGGGAAGTAAAAACCTTACTGGGACAGGTACACTCGAGCCATTCTTATTTGCAAGATTGT 481 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 CGGGAAGTATAAACCTTACTGGGACAGGTACACTCGAGCCATTCTTATTTGCAAGATTGC 601 Query 482 ATCACAGCTTAAAGCACTTGAAGAGTTTG--TT-TTCTTCATCAAGTCATTACGAAAATA 538 ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| Sbjct 602 ATCACAGCTTAAAACACTTGAAGAGTTTGTTTTCTTCTTCATCAAGTCATTACGAAAATA 661 Query 539 GATATCTAGATACTTACTTAATCAGGTTGAATCTTGTACATTA-A-ATTGTAGACCTTAT 596 |||||||||||||||||||| |||||||||||||| | ||||| | |||||||| |||| Sbjct 662 GATATCTAGATACTTACTTAGTCAGGTTGAATCTTATGCATTATATATTGTAGATCTTAG 721 Query 597 AACAGCAGCAGATTCAGATTTCTGCAAGTGAAGAGTGTAGTTTATAGTTGAATAGATTAC 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 AACAGCAGCAGATTCAGATTTCTGCAAGTGAAGAGTGTAGTTTATAGTTGAATAGATTAC 781 Query 657 AGATAAGAGC 666 ||| |||||| Sbjct 782 AGAGAAGAGC 791 Score = 111 bits (60), Expect = 5e-24 Identities = 65/67 (97%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 356 AGAGCCGTCTCTTCAGGAGCTAGTGGATGAGAACATAAACTCAACTAGACCCGTTGACAA 415 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 452 AGA-CCGTCTCTTCAGGAGCTAGTGGATGAGAACATAAACTCAACTAGACTCGTTGACAA 510 Query 416 CAACCTC 422 ||||||| Sbjct 511 CAACCTC 517 > Ahg312807 jgi|Araly1|312807|fgenesh1_pm.C_scaffold_1001587 Length=1617 Score = 67.6 bits (36), Expect = 1e-10 Identities = 43/46 (93%), Gaps = 1/46 (2%) Strand=Plus/Plus Query 210 TACAACCTAGCCACCACAATGATGACCATGAAATCTCACATC-AAG 254 ||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct 457 TACGACATAGCCACCACAATGATGACCATGAAATCTCACATCCAAG 502 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24436789797 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5