BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74090.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909036 jgi|Araly1|909036|Al_scaffold_0002_2117 1644 0.0
Ahg338279 jgi|Araly1|338279|fgenesh1_pg.C_scaffold_2000378 1007 0.0
Ahg926796 jgi|Araly1|926796|scaffold_202357.1 771 0.0
> Ahg909036 jgi|Araly1|909036|Al_scaffold_0002_2117
Length=1041
Score = 1644 bits (890), Expect = 0.0
Identities = 979/1023 (96%), Gaps = 1/1023 (0%)
Strand=Plus/Plus
Query 125 ACGATCACGACCACGACCCTACCGAGTCACGACGAGACCAAGACAGAATCAACAGAGTTC 184
||| |||||||||||||| |||| || || ||||||||||||||||||||||||||||||
Sbjct 20 ACG-TCACGACCACGACCGTACCAAGCCATGACGAGACCAAGACAGAATCAACAGAGTTC 78
Query 185 GAGAAAAATCAAAAACGGTATCAAGACCTCATCTCCACGTTTCCTCACGAGAAAGGCTGG 244
||||| ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 79 GAGAAGAATCAGAAACGGTACCAAGAACTAATCTCCACGTTTCCTCACGAGAAAGGCTGG 138
Query 245 AGACCGAAAGAGCCCCTGATCGAGTATGGTGGTTACTGGTGGCTACCGTCTCTCCTCGAA 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 139 AGACCGAAAGAGCCCCTGATCGAGTATGGTGGTTACTGGTGGCTACCGCCTCTCCTCGAA 198
Query 305 GGTTGTATTCACGCGCAAGAGTTCTTTCAAGCACGACCCAGTGACTTCCTCGTCTGTAGC 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 199 GGTTGTATTCACGCGCAAGAGTTCTTTCAAGCGCGACCCAGTGACTTCCTCGTCTGTAGC 258
Query 365 TACCCAAAGACAGGCACCACTTGGCTCAAAGCCCTGACTTTCGCCATCGCAAATCGTTCC 424
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 259 TACCCAAAGACAGGTACCACTTGGCTCAAAGCCCTGACTTTCGCCATTGCCAATCGTTCC 318
Query 425 CGCTTCGATGATTCCTCCAACCCTCTCCTGAAACGTAACCCTCACGAGTTTGTTCCTTAC 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CGCTTCGATGATTCCTCCAACCCTCTCCTGAAACGTAACCCTCACGAGTTTGTTCCTTAC 378
Query 485 ATTGAGATAGATTTCCCTTTCTTCCCTGAAGTTGATGTTCTCAAAGACAAAGGGAACACT 544
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ATTGAGATCGATTTCCCTTTCTTCCCTGAAGTTGATGTTCTCAAAGACAAAGGGAACACT 438
Query 545 CTGTTTTCGACTCATATCCCATACGAGTTATTACCTGATTCGGTTGTGAAATCCGGTTGT 604
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 439 CTGTTTTCGACTCATATCCCATACGAGTTATTACCTGATTCGGTTGTAAAATCAGGTTGT 498
Query 605 AAGATGGTTTACATATGGAGAGAACCAAAGGACACTTTCATCTCCATGTGGACTTTCCTT 664
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 499 AAGATGGTTTACATCTGGAGAGAACCAAAGGACACTTTCATCTCAATGTGGACTTTCCTT 558
Query 665 CACAAGGAAAGGACAGAGCTTGGACCTGTCAGCAATCTTGAGGAGTCTTTTGATATGTTC 724
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 559 CACAAGGAAAGGACAGAACTTGGACCTGTCAACAATCTTGAGGAGTCTTTTGATATGTTC 618
Query 725 TGTCGTGGTCTGTCTGGGTATGGTCCTTATCTTAATCATATCCTGGCGTATTGGAAAGCA 784
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 619 TGTCGTGGTCTGTCTGGGTACGGTCCTTATCTTGATCATATCCTGGCGTATTGGAAAGCC 678
Query 785 TACCAAGAGAATCCAGATAGGATCTTGTTCCTCAAGTACGAGACGATGAGAGCTGATCCT 844
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 679 TACCAAGAGAATCCAGATCGGATTTTGTTCCTCAAGTACGAGACTATGAGAGCTGATCCT 738
Query 845 TTACCGTACGTGAAGAGTCTGGCTGAGTTTATGGGTCATGGATTCACAGCCGAGGAAGAG 904
|| ||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||
Sbjct 739 TTGCCGTATGTGAAGAGTCTGGCTGAGTTTATGGGTTATGGATTCACTGCTGAGGAAGAG 798
Query 905 GAGAAAGGTGTTGTTGAGAAAGTGGTGAATCTTTGCAGCTTCGAGACGTTGAAGAATCTT 964
||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 799 GAGAAAGATGTTGTTGAGAAAGTGGTGAATCTTTGCAGTTTCGAGACATTGAAGAATCTT 858
Query 965 GAAGCTAACAAAGGGGAGAAAGACAGAGAGGATCGTCCTGGTGTTTACGCGAATAGCGCG 1024
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 859 GAAGCTAACAAAGGTGAGAAAGACAGAGAGGATCGTCCTGGTGTTTACGCGAATAGTGCC 918
Query 1025 TATTTCAGGAAAGGAAAGGTGGGAGATTGGTCGAACTATCTGACTCCGGAGATGGCTGCT 1084
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 919 TATTTCAGGAAAGGAAAGGTGGGAGATTGGTCAAATTATCTGACTCCGGAGATGGCAGCT 978
Query 1085 CGTATAGATGGGTTAATGGAAGAGAAATTTAAGGGCACCGGCTTGCTTGAACATGGTAAA 1144
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 979 CGTATCGATGGGTTAATGGAAGAGAAATTTAAGGGCACCGGTTTGCTTGAACATGGTAAA 1038
Query 1145 TGA 1147
|||
Sbjct 1039 TGA 1041
> Ahg338279 jgi|Araly1|338279|fgenesh1_pg.C_scaffold_2000378
Length=1065
Score = 1007 bits (545), Expect = 0.0
Identities = 878/1033 (85%), Gaps = 45/1033 (4%)
Strand=Plus/Plus
Query 144 TACCGAGTCACGACGAGACCAAGACAGAATCAACAGAGTTCGAGAAAAATCAAAAACGGT 203
|||| ||| || |||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 53 TACCAAGTAACCACGAGACCAAGACAGAATCAACAGAGTTCGAGAAGAATCAGAAACGGT 112
Query 204 ATCAA-GACCTCATCTCCACGTTTCCTCACGA-GAAAGGCTGGAGACCGAAAGAGCCCCT 261
| ||| ||||| ||| | || ||||||||| | |||||||||||||||||||| | || |
Sbjct 113 A-CAAAGACCTAATCGCTACCTTTCCTCAC-ACGAAAGGCTGGAGACCGAAAG-GTCCGT 169
Query 262 -GATCGAGTATGGTGGTTACTGGTG-GCTACCGTCTCTCCTCGAAGGTTGTATTCACGCG 319
||| ||||| ||||| ||||| | ||| | | ||| | |||||||| ||||||||
Sbjct 170 TGATAGAGTACCATGGTTGCTGGTTCG-TACAGCCGCTCTTAGAAGGTTGCCTTCACGCG 228
Query 320 CAAGAGTTCTTTCAAGCACGACCCAGTGACTTCCTCGTCTGTAGCTACC-CAAAGACAGG 378
||||||||||| |||||| |||||| |||||||||| | ||||||| || ||||||||||
Sbjct 229 CAAGAGTTCTTCCAAGCAAGACCCATTGACTTCCTCATTTGTAGCT-CCGCAAAGACAGG 287
Query 379 CACCACTTGGCTCAAAGCCCTGACTTTCGCCATCG-CAAATCGTTCCCGCTTCGATGATT 437
|||||||||||||| || || ||||||||||||| ||| ||| | ||||||| ||||
Sbjct 288 TACCACTTGGCTCAAGGCTCTAACTTTCGCCATCGTCAA-TCGAACTTGCTTCGACGATT 346
Query 438 CCTCCAACCCTCTCCTGAAACGTAACCCTCACGAGTTTGTTCCTTACATTGAGATA-GA- 495
|||| ||||||||||| |||||||||||||| ||| ||||||||| |||||||| | ||
Sbjct 347 CCTCAAACCCTCTCCTAAAACGTAACCCTCATGAGCTTGTTCCTTTCATTGAGA-ACGAA 405
Query 496 TTTCCCTTTCTTCCCTGAAGTTGATGTTCTCAAAGACAAAGGGAACACTCTGTTTTCGAC 555
||| | |||||||||| ||||||||||| ||||||||||||| ||||||||||| || ||
Sbjct 406 TTTGC-TTTCTTCCCTCAAGTTGATGTTATCAAAGACAAAGGAAACACTCTGTTCTCTAC 464
Query 556 TCATATCCCATACGAGTTATTACCTGAT-TCGGTTGTGAAATCCGGTTGTAAGATGGTTT 614
||||||||| |||| ||||||||| || || ||| ||| |||||||||||||||||||
Sbjct 465 TCATATCCCGTACGGGTTATTACC-GAAATCTATTGCGAACTCCGGTTGTAAGATGGTTT 523
Query 615 ACATATGGAGAGAACCAAAGGACACTTTCATCTCCATGTGGACTTTCCTTC-ACAAGGAA 673
|||| |||||||| || |||||||||||||||||||||||||||||| ||| | ||| ||
Sbjct 524 ACATTTGGAGAGACCCGAAGGACACTTTCATCTCCATGTGGACTTTC-TTCCAAAAGCAA 582
Query 674 AGGACAGAGCTT-GGACCTGTCAGCAATCTTGAGGAGTCTTTTGATATGTTCTGTCGTGG 732
||| |||| ||| || ||| ||| | |||||| ||||||||||||||||| ||||| ||
Sbjct 583 AGGTCAGA-CTTTGGCCCTCTCAATAGTCTTGAAGAGTCTTTTGATATGTTTTGTCGAGG 641
Query 733 T-CTGTCTGGGTATGGTCCTTATCTTA-ATCATATCCTGGCGTATTGGAAAGCATACCAA 790
| || |||| ||| ||||||||||| | ||||| || ||| |||||||||||| ||||||
Sbjct 642 TACT-TCTGTGTACGGTCCTTATCT-AGATCATGTCTTGGGGTATTGGAAAGCTTACCAA 699
Query 791 GAGAATCCAGAT-AGGATCTTGTTCCTCAAGTACGAGACGATGAGAGCTGATCCTTTACC 849
||||||||| || || || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 700 GAGAATCCAAATCAG-ATATTGTTCCTCAAGTACGAGACAATGAGAGCTGATCCTTTACC 758
Query 850 GTACGTGAAGAG-TCTGGCTGAGTTTATGGGTCATGGATTCACAGCCGAGGAAGAGGAGA 908
| | |||||||| | ||||| ||||||||||| | ||||||||||| ||||||||| |||
Sbjct 759 GCATGTGAAGAGAT-TGGCTCAGTTTATGGGTTACGGATTCACAGCTGAGGAAGAGAAGA 817
Query 909 AAGGTGTTGTTGAGAAAGTGGTGAATCTTTGCAGCTTCGAGACGTTGAAGAATCTTGAAG 968
||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 818 AAGATGTTGTTGAGAAAGTTGTGAATCTTTGCAGTTTCGAGACGTTAAAGAATCTTGAAG 877
Query 969 CT-AACAAAGGGGAGAAAGA-CAGAGAGGATCGTC-CTG-GTGTTTAC-G-C-GAATAGC 1021
| ||| |||| |||||| | ||||||||| | | || | ||| | | | |||||||
Sbjct 878 -TGAACGAAGGAGAGAAA-ATCAGAGAGGA-CATTGCTTCG-GTTCATTGGCCGAATAGC 933
Query 1022 GCGTATTTCAGGAAAGGAAAGGTGGGAGATTGGT-CGAACTATCTGACTCCGGAGATGGC 1080
|||||||||||||| |||| ||| ||||||||| | ||||| |||||||||||||||||
Sbjct 934 GCGTATTTCAGGAAGGGAATGGTTGGAGATTGGCAC-AACTACCTGACTCCGGAGATGGC 992
Query 1081 TGCTCGTATAGATGGGTTAATGGAAGAGAAATTTAAGGGCACCGGCTTGCTTGAACATGG 1140
|||||||| |||||| ||||||||||||||||||||||| | || |||||||||||||
Sbjct 993 AGCTCGTATCGATGGGCTAATGGAAGAGAAATTTAAGGGCTCTGGTTTGCTTGAACATGA 1052
Query 1141 TA-A-ATGAATGA 1151
|| | |||| |||
Sbjct 1053 TATAGATGACTGA 1065
> Ahg926796 jgi|Araly1|926796|scaffold_202357.1
Length=1057
Score = 771 bits (417), Expect = 0.0
Identities = 814/1000 (81%), Gaps = 50/1000 (5%)
Strand=Plus/Plus
Query 176 ACAGAGTTCGAGAAAAATCA-AA-AACGGTATCAAGACCTCATCT-CCACGTTTCCTCAC 232
|||||||||||||| | || || || ||| || || |||| | | ||| |||| |
Sbjct 66 ACAGAGTTCGAGAAGACCCAGAAGAA--GTACCACGATTTCAT-TGCTACGCTTCC-AAA 121
Query 233 GAG-AAAGGCTGGAGA-CCGAAAGAGCCCCTGA-TCGAGTATGGTGGTTACTGGTGGCTA 289
||| |||||||||||| ||| | ||| | | | || | |||||||| ||||||||| |
Sbjct 122 GAGCAAAGGCTGGAGACCCG-ATGAGATCTTAACTC-AATATGGTGGACACTGGTGGCAA 179
Query 290 CCGTCTCTCCTCGAAGGT-TGTATTCACGCGCAAGAGTTC-TTTC-AAGCACGACCCAGT 346
| ||||||||||||| | | ||||||| || || | |||| |||||||||||| |
Sbjct 180 GAATGTCTCCTCGAAGGTCT-TTTTCACGC-TAA-AGACCATTTCGAAGCACGACCCACT 236
Query 347 GACTTCCTCGTCTGTAGCTACCCAAAGACAGGCACCACTTGGCTCAAAGCCCTGACTTTC 406
|| ||||||||||||||||||||||| || || || |||||||||||||| || |||| |
Sbjct 237 GATTTCCTCGTCTGTAGCTACCCAAAAACCGGTACGACTTGGCTCAAAGCACTTACTTAC 296
Query 407 GCCATCG-CAAATCGTTCCCGCTT-CGATGATTCCTCCAACCCTCTCCTGAAACGTAACC 464
|| |||| | |||||||| || || ||| || || | ||||| ||||| ||||| ||||
Sbjct 297 GCAATCGTC-AATCGTTCTCG-TTACGACGACGCCACAAACCCACTCCTCAAACGAAACC 354
Query 465 CTCACGAGTTTGTTCCTTACATTGAGATAGATTTC-CCTTTCTTCCCTGA-AGTTGATGT 522
|||||||||| || |||||| ||||||| |||||| | ||| | ||| || ||||||||
Sbjct 355 CTCACGAGTTCGTCCCTTACGTTGAGATCGATTTCGCGTTT-TACCC-GACCGTTGATGT 412
Query 523 TC-TCAAAGACA-AAGGGAACACTCTGTTT-TCGACTCATATCCCATA-CGAGTTATTAC 578
|| || |||||| || |||| | || ||| || || ||||||||| | || ||||||||
Sbjct 413 TCTTC-AAGACAGAA-AGAACCCACT-TTTCTCCACCCATATCCCA-AGCGGGTTATTAC 468
Query 579 CTGATTCGGTTGTGAAATCCGGTTGTAAGATGGTTTACATATGGAGAGAACC-AAAGGAC 637
| |||||| ||||||| || |||||||||||||| |||||||||||||| || ||| ||
Sbjct 469 CCGATTCGATTGTGAACTCGGGTTGTAAGATGGTGTACATATGGAGAGACCCGAAA-GAT 527
Query 638 ACTTTCATCTCCATGTGGACTTTCCTT-CACAAGGA-AAG-GACAGAGCTTGGACCTGTC 694
||||||||||||||||||||||| ||| |||||||| ||| || || || | |
Sbjct 528 ACTTTCATCTCCATGTGGACTTT-CTTACACAAGGAGAAGTCTCA-AG-AAGG-TCAATT 583
Query 695 AGC-AATCTTGAGGAG-TCTTTTGATATGTTCTGTCGTGGTCTGTCTGGGTATGGTCCTT 752
||| | |||||||||| | ||||||||||| ||| ||| | |||| ||| |||||||
Sbjct 584 AGCGAGTCTTGAGGAGAGC-TTTGATATGTTTTGTAAAGGTTTATCTGTGTACGGTCCTT 642
Query 753 ATCTTAATCATATCCT-GGCGTATTGGAAAGCATACCAAGAGAATCCAGATAGGATCTTG 811
|||| ||||| | | || |||||||| || || |||||||||||||||||||| |||
Sbjct 643 ATCTGGATCATGTGTTAGG-TTATTGGAAGGCTTATCAAGAGAATCCAGATAGGATTTTG 701
Query 812 TTCCTCAAGTACGAGACGATGAGAGCTGATCCTTTACCGTACGTGAAGAG-TCTGGCTGA 870
||||| | ||| ||||| ||||||||| ||||||| || | |||||||| | |||||||
Sbjct 702 TTCCTTAGGTATGAGACTATGAGAGCTAATCCTTTGCCTTTTGTGAAGAGAT-TGGCTGA 760
Query 871 GTTTATGGGTCATGGATTCACAGCCGAGGAAGAGGAGAAAGGTGTTGTTGAGAAAGTGGT 930
||| |||||| |||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 761 GTTCATGGGTTATGGATTCACGGATGAGGAAGAGGAGAAAGGTGTTGCTGAGAAAGTGGT 820
Query 931 GAATCTTTGCAGCTTCGAGACGTTGAAGAATCTTGAAGCTAACAAAGGGGAGAAAGACAG 990
||| ||||| ||||| |||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 821 GAAGCTTTGTAGCTTTGAGACGTTGAAGAATCTTGAAGCTAACAAAGGAGATAAAGAAAG 880
Query 991 AGAGGATCGTCCTGGTGTTTACGCGAATAGCGCGTATTTCAGGAAAGGAAAGGTGGGAGA 1050
|||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 881 AGAGGATCGTCCTGCTGTTTATGCGAATAGCGCGTATTTTAGGAAAGGAAAGGTTGGAGA 940
Query 1051 TTGGTCGAACTATCTGACTCCGGAGATGGCTGCTCGTATAGATGGGTTAATGGAAGAGAA 1110
|||| | || ||||||||||||||||||||||||||||| ||||| ||| |||| || ||
Sbjct 941 TTGGGCTAATTATCTGACTCCGGAGATGGCTGCTCGTATTGATGGTTTAGTGGAGGAAAA 1000
Query 1111 ATTTAAGGGCACCGGCTTGCTTGAACATGGTAAATGAATG 1150
||| || | || ||||||||| |||||| ||| ||||||
Sbjct 1001 ATTCAAAGATACTGGCTTGCTTCAACATGATAACTGAATG 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5