BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74100.1
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926796 jgi|Araly1|926796|scaffold_202357.1 1729 0.0
Ahg909036 jgi|Araly1|909036|Al_scaffold_0002_2117 743 0.0
> Ahg926796 jgi|Araly1|926796|scaffold_202357.1
Length=1057
Score = 1729 bits (936), Expect = 0.0
Identities = 1016/1056 (96%), Gaps = 0/1056 (0%)
Strand=Plus/Plus
Query 171 TCACTCGATCTCATCCGCAATGGAATCAAAGACAACCCAAAACGGATCCGAAGTCGTCGA 230
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TCACTCGATCTCATCAGCAATGGAATCAAAGACAACCCAAAACGGATCCGAAGTCGTCGA 61
Query 231 ACTCACAGAGTTCGAGAAAACCCAGAAGAAGTATCAAGATTTCATCGCTACACTTCCAAA 290
|||||||||||||||||| |||||||||||||| || |||||||| ||||| ||||||||
Sbjct 62 ACTCACAGAGTTCGAGAAGACCCAGAAGAAGTACCACGATTTCATTGCTACGCTTCCAAA 121
Query 291 GAGCAAAGGCTGGAGACCAGATGAGATCTTAACCCAATACGGTGGACACTGGTGGCAAGA 350
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 122 GAGCAAAGGCTGGAGACCCGATGAGATCTTAACTCAATATGGTGGACACTGGTGGCAAGA 181
Query 351 ATGTCTCCTCGAAGGTCTTTTTCACGCTAAAGACCATTTCGAAGCACGACCAACTGATTT 410
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 182 ATGTCTCCTCGAAGGTCTTTTTCACGCTAAAGACCATTTCGAAGCACGACCCACTGATTT 241
Query 411 CCTCGTCTGTAGCTACCCAAAAACCGGTACAACTTGGCTCAAAGCACTAACTTACGCAAT 470
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 242 CCTCGTCTGTAGCTACCCAAAAACCGGTACGACTTGGCTCAAAGCACTTACTTACGCAAT 301
Query 471 CGTCAATCGTTCTCGTTACGACGACGCCGCAAACCCACTCCTCAAACGAAACCCTCACGA 530
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 302 CGTCAATCGTTCTCGTTACGACGACGCCACAAACCCACTCCTCAAACGAAACCCTCACGA 361
Query 531 GTTTGTCCCTTACGTTGAGATCGACTTCGCGTTTTACCCCACCGTTGATGTTCTTCAAGA 590
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 362 GTTCGTCCCTTACGTTGAGATCGATTTCGCGTTTTACCCGACCGTTGATGTTCTTCAAGA 421
Query 591 CAGAAAGAACCCACTTTTCTCTACTCATATCCCAAACGGGTTATTACCCGATTCGATTGT 650
||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 422 CAGAAAGAACCCACTTTTCTCCACCCATATCCCAAGCGGGTTATTACCCGATTCGATTGT 481
Query 651 GAACTCTGGTTGTAAGATGGTGTACATATGGAGAGACCCGAAAGATACTTTCATCTCCAT 710
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GAACTCGGGTTGTAAGATGGTGTACATATGGAGAGACCCGAAAGATACTTTCATCTCCAT 541
Query 711 GTGGACTTTCTTACACAAGGAGAAGTCTCAAGAAGGTCAATTAGCGAGTCTTGAGGACAG 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 542 GTGGACTTTCTTACACAAGGAGAAGTCTCAAGAAGGTCAATTAGCGAGTCTTGAGGAGAG 601
Query 771 CTTTGATATGTTTTGTAAAGGTTTATCTGTGTATGGTCCTTATCTGGATCATGTTTTGGG 830
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 602 CTTTGATATGTTTTGTAAAGGTTTATCTGTGTACGGTCCTTATCTGGATCATGTGTTAGG 661
Query 831 TTATTGGAAAGCTTACCAAGAGAATCCAGATAGGATTTTGTTCCTTAGGTACGAGACCAT 890
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 662 TTATTGGAAGGCTTATCAAGAGAATCCAGATAGGATTTTGTTCCTTAGGTATGAGACTAT 721
Query 891 GAGGGCCAATCCTTTGCCTTTTGTGAAGAGATTGGCTGAGTTCATGGGTTATGGATTCAC 950
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GAGAGCTAATCCTTTGCCTTTTGTGAAGAGATTGGCTGAGTTCATGGGTTATGGATTCAC 781
Query 951 TGATGAGGAAGAGGAGAATGGTGTTGCTGAGAAAGTGGTGAAGCTTTGTAGCTTTGAGAC 1010
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GGATGAGGAAGAGGAGAAAGGTGTTGCTGAGAAAGTGGTGAAGCTTTGTAGCTTTGAGAC 841
Query 1011 GTTGAAGAATCTTGAAGCTAACAAAGGTGATAAAGAAAGAGAGGATCGTCCTGCTGTTTA 1070
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 842 GTTGAAGAATCTTGAAGCTAACAAAGGAGATAAAGAAAGAGAGGATCGTCCTGCTGTTTA 901
Query 1071 TGCGAATAGCGCGTATTTTAGGAAAGGAAAGGTTGGAGATTGGGCTAATTATTTGACTCC 1130
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 902 TGCGAATAGCGCGTATTTTAGGAAAGGAAAGGTTGGAGATTGGGCTAATTATCTGACTCC 961
Query 1131 TGAGATGGCTGCTCGTATTGATGGCTTAGTGGAGGAGAAATTCAAAGATACTGGCTTGCT 1190
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 962 GGAGATGGCTGCTCGTATTGATGGTTTAGTGGAGGAAAAATTCAAAGATACTGGCTTGCT 1021
Query 1191 TCAACATGATAACTGAATGTGTTTTATTCTGGTCCT 1226
|||||||||||||||||||||| | ||||||||||
Sbjct 1022 TCAACATGATAACTGAATGTGTCATCTTCTGGTCCT 1057
> Ahg909036 jgi|Araly1|909036|Al_scaffold_0002_2117
Length=1041
Score = 743 bits (402), Expect = 0.0
Identities = 804/994 (81%), Gaps = 44/994 (4%)
Strand=Plus/Plus
Query 235 ACAGAGTTCGAGAA-AACCCAGAAGA-AGTATCAAGATTTCATCGCTACACTTCC-AAAG 291
|||||||||||||| || ||||| | ||| ||||| | ||| | || |||| | |
Sbjct 70 ACAGAGTTCGAGAAGAA-TCAGAA-ACGGTACCAAGAACTAATCTCCACGTTTCCTCACG 127
Query 292 AGCAAAGGCTGGAGACCAG-ATGAGATCTTAACCCAATACGGTGGACACTGGTGGCAAGA 350
|| |||||||||||||| | | ||| | | | | | || ||||| ||||||||| |
Sbjct 128 AG-AAAGGCTGGAGACC-GAAAGAGCCCCTGATCGAGTATGGTGGTTACTGGTGGCTACC 185
Query 351 ATGTCTCCTCGAAGGTCT-TTTTCACGC-TAA-AGACCATTTCGAAGCACGACCAACTGA 407
||||||||||||| | | ||||||| || || | |||| |||| ||||| | |||
Sbjct 186 GCCTCTCCTCGAAGGT-TGTATTCACGCGCAAGAGTTC-TTTC-AAGCGCGACCCAGTGA 242
Query 408 TTTCCTCGTCTGTAGCTACCCAAAAACCGGTACAACTTGGCTCAAAGCACTAACTTACGC 467
||||||||||||||||||||||| || ||||| |||||||||||||| || |||| |||
Sbjct 243 CTTCCTCGTCTGTAGCTACCCAAAGACAGGTACCACTTGGCTCAAAGCCCTGACTTTCGC 302
Query 468 AATCGTCAATCGTTCTCG-TTACGACGACGCCGCAAACCCACTCCTCAAACGAAACCCTC 526
|| | ||||||||| || || ||| || || | ||||| ||||| ||||| |||||||
Sbjct 303 CATTGCCAATCGTTCCCGCTT-CGATGATTCCTCCAACCCTCTCCTGAAACGTAACCCTC 361
Query 527 ACGAGTTTGTCCCTTACGTTGAGATCGACTTCGCGTTT-TACCC-CACCGTTGATGTTCT 584
|||||||||| |||||| |||||||||| ||| | ||| | ||| | ||||||||||
Sbjct 362 ACGAGTTTGTTCCTTACATTGAGATCGATTTC-CCTTTCTTCCCTGA-AGTTGATGTTC- 418
Query 585 TC-AAGACAGAA-AGAACCCACT-TTTCTCTACTCATATCCCAAACGGGTTATTACCCGA 641
|| |||||| || |||| | || ||| || |||||||||||| ||| ||||||||| ||
Sbjct 419 TCAAAGACA-AAGGGAACACTCTGTTT-TCGACTCATATCCCATACGAGTTATTACCTGA 476
Query 642 TTCGATTGTGAACTCTGGTTGTAAGATGGTGTACATATGGAGAGACCCGAAA-GATACTT 700
|||| |||| || || |||||||||||||| ||||| |||||||| || ||| || ||||
Sbjct 477 TTCGGTTGTAAAATCAGGTTGTAAGATGGTTTACATCTGGAGAGAACC-AAAGGACACTT 535
Query 701 TCATCTCCATGTGGACTTT-CTTACACAAGGAGAA-GTCTCAAGAAGG-TCAATTAGCGA 757
||||||| ||||||||||| ||| |||||||| || | | || || | | | | |
Sbjct 536 TCATCTCAATGTGGACTTTCCTT-CACAAGGA-AAGGACAGAACTTGGACCTGTCAAC-A 592
Query 758 GTCTTGAGGACAG-C-TTTGATATGTTTTGTAAAGGTTTATCTGTGTATGGTCCTTATCT 815
|||||||| || | ||||||||||| ||| ||| | |||| ||| |||||||||||
Sbjct 593 ATCTTGAGG--AGTCTTTTGATATGTTCTGTCGTGGTCTGTCTGGGTACGGTCCTTATCT 650
Query 816 GGATCATGTTTTGG-GTTATTGGAAAGCTTACCAAGAGAATCCAGATAGGATTTTGTTCC 874
|||||| | ||| | ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 651 TGATCATATCCTGGCG-TATTGGAAAGCCTACCAAGAGAATCCAGATCGGATTTTGTTCC 709
Query 875 TTAGGTACGAGACCATGAGGGCCAATCCTTTGCCTTTTGTGAAGAGAT-TGGCTGAGTTC 933
| | ||||||||| ||||| || |||||||||| | ||||||||| | ||||||||||
Sbjct 710 TCAAGTACGAGACTATGAGAGCTGATCCTTTGCCGTATGTGAAGAG-TCTGGCTGAGTTT 768
Query 934 ATGGGTTATGGATTCACTGATGAGGAAGAGGAGAATGGTGTTGCTGAGAAAGTGGTGAAG 993
||||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||
Sbjct 769 ATGGGTTATGGATTCACTGCTGAGGAAGAGGAGAAAGATGTTGTTGAGAAAGTGGTGAAT 828
Query 994 CTTTGTAGCTTT-GAGACGTTGAAGAATCTTGAAGCTAACAAAGGTGATAAAGAAAGAGA 1052
||||| || ||| ||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 829 CTTTGCAG-TTTCGAGACATTGAAGAATCTTGAAGCTAACAAAGGTGAGAAAGACAGAGA 887
Query 1053 GGATCGTCCTGCTGTTTATGCGAATAGCGCGTATTTTAGGAAAGGAAAGGTTGGAGATTG 1112
||||||||||| |||||| |||||||| || ||||| |||||||||||||| ||||||||
Sbjct 888 GGATCGTCCTGGTGTTTACGCGAATAGTGCCTATTTCAGGAAAGGAAAGGTGGGAGATTG 947
Query 1113 GGCTAATTATTTGACTCCTGAGATGGCTGCTCGTATTGATGGCTTAGTGGAGGAGAAATT 1172
| | |||||| ||||||| |||||||| |||||||| ||||| ||| |||| ||||||||
Sbjct 948 GTCAAATTATCTGACTCCGGAGATGGCAGCTCGTATCGATGGGTTAATGGAAGAGAAATT 1007
Query 1173 CAAAGATACTGGCTTGCTTCAACATGATAACTGA 1206
|| | || || |||||| |||||| ||| |||
Sbjct 1008 TAAGGGCACCGGTTTGCTTGAACATGGTAAATGA 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50512865025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5