BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74110.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339613 jgi|Araly1|339613|fgenesh1_pg.C_scaffold_2001712 2549 0.0
> Ahg339613 jgi|Araly1|339613|fgenesh1_pg.C_scaffold_2001712
Length=1614
Score = 2549 bits (1380), Expect = 0.0
Identities = 1539/1617 (95%), Gaps = 6/1617 (0%)
Strand=Plus/Plus
Query 1 ATGACTATTGATATGTATCTTTCCTTCGCTTCTCGTTCTGGATCTTCTCCATTTCCAAGT 60
||| ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 1 ATGGCTATTGATATGTATCTTTCCTTCGCTTCTCGATCTGGATCTTCTTCATTTCTGAGT 60
Query 61 CTCGAGCTTTGTCTCAGCATTTTCCTCTTCATCTCCCTTTTCGTTTTCTGGTTGACTCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCGAGCTTTGTCTCAGCATTTTCCTCTTCATCTCCCTTTTCGTTTTCTGGTTGACTCCA 120
Query 121 GGTGGCTTTGCTTGGGCACTCTACAAAGCTCGTTTCCATACCCGACCTGAGTCCAAAACC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTGGCTTTGCTTGGGCACTCTACAAAGCTCGTTTCCATACCCGACCTGAGTCCAAAACC 180
Query 181 GGACCTGCCATTCCCGGCCCGTCTGGTCTCCCCATCTTTGGCCTCCTCTTGGCTTTTGTC 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GGACCCGCCATTCCCGGCCCGTCTGGTCTCCCCATCTTTGGCCTCCTCTTGGCTTTCGTC 240
Query 241 AACAACGCCTTAACACACAGAATCCTCGCCAATATTGCTGACACTTGCAAAGCAAAAGCT 300
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 AATAACGCCTTAACACACAGAATCCTCACCAATATTGCTGACACTTGCAAAGCAAAAGCT 300
Query 301 CTCATGGCGTTCTCCGTAGGGTCAACCCGGTTTGTTATAACCAGCGAACCAGAGACCGCG 360
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| ||
Sbjct 301 CTCATGGCGTTTTCCGTCGGGTCGACCCGGTTTGTGATAACCAGCGAACCGGAGACAGCA 360
Query 361 AAAGAGCTTCTAAACAGCTCTGCTTTTGCAGACCGGCCAGTGAAAGAGTCTGCTTACGAG 420
|||| |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 361 AAAGTGCTTCTTAACAGCTCTGCTTTTGTAGACCGGCCAGTGAAAGAGTCGGCTTACGAG 420
Query 421 CTGCTCTTTGATAGAGCCATGGGGTTTGCTCCCTTTGGTGATTACTGGAGAGAGTTGAGG 480
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 CTGCTCTTTCATAGAGCCATGGGGTTTGCTCCCTTTGGTGATTACTGGAGAGAGCTGAGG 480
Query 481 AGAATCTCTTCTACCCATCTCTTCAGCCCTAAGAGGATCTTCAGTTCTGGCGAGTCCCGC 540
|||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 481 AGAATCTCTTCTACTCATCTCTTCAGCCCTAAGAGGATCTCCAGTTTTGGCGAGTCCCGC 540
Query 541 CGAAAAATCGGGCAAAACATGGTAGGAGAGATCAAGAACGCAATGGAGTGTTATGGAGAA 600
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 541 CGAAAAATCGGGCAAGACATGGTAGGAGAGATCAAGAACTCAATGGAGAGTTATGGAGAA 600
Query 601 GTGCATATAAAAAAGATCTTGCATTTCGGATCACTCAACAACGTGATGTCTAGCGTTTTC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGCATATAAAAAAGATCTTGCATTTCGGATCACTCAACAACGTGATGTCTAGCGTTTTT 660
Query 661 GGTAAAACATACAACTTCAACGAAGGTATTGTCTACTCGAAAGAGAGCAATGAGTTGGAG 720
|||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 661 GGTAAAACGTACAACTTCAACGAAGGTATTGTCTACTCTAAAGAGAGCATTGAGTTGGAG 720
Query 721 CATTTGGTGTCTGAAGGCTATGAGCTGCTCGGAATCTTCAACTGGAGTGATCATTTCCCT 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CATTTGGTGTCCGAAGGCTATGAGCTGCTCGGAATCTTCAACTGGAGTGATCATTTCCCT 780
Query 781 GGAATGAGATGGTTAGATTTACAAGGTGTGAGGAGAAGATGTCGTAGTTTGGTCGGTAGA 840
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 781 GGAATGAGATGGTTAGATTTACAAGGCGTGAGGAGAAGATGCCGTAGTTTGGTCGGTAAA 840
Query 841 GTGAATGTGTTCGTCGGTAAGATAATCAATGACCACAAATCAAAGAGGTCACTTCGTGAT 900
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 841 GTGAATGTGTTCGTCGGTAAGATAATCAACGACCATAAATCAAAGAGGTCTCTTCGTGAT 900
Query 901 AATCCTGAAGAGAGCACTTATGATGATGACTTTGT-AGATGTCTTACTTGGCATGCACGG 959
|||| ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 901 AATCAAGAAGAGAGCACTTATGATGATGATTTTGTCA-ATGTCTTACTTGGCATGCACGG 959
Query 960 CAACAGCAAACTTTCTGACTCCGATATGATCGCAGTCCTTTGGGAAATGATTTTTAGGGG 1019
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 960 CAACAGCAAACTTTCTGACTCCGATATGATTGCCGTCCTTTGGGAAATGATTTTTAGGGG 1019
Query 1020 AACAGACACGGTGGCGATTCTCTTGGAATGGATCCTTGCGAGGATGGTTCTTCACCCTGA 1079
||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||
Sbjct 1020 AACAGACACGGTGGCGATTCTATTGGAATGGATCCTTGTGAGGATGATTCTTCACCCTGA 1079
Query 1080 CATTCAAGCCAAGGCGCAGGCCGAGATCGATTGTATCGTGGGTGACTCGGGACGTCAAGT 1139
||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct 1080 CATTCAAGCCAAGGCGCAGGCCGAGATCGATGGTATCGTGGGTGACCCGGAACGTCAAGT 1139
Query 1140 CA-CAGACTCAGACCTCCCCAAGCTCCCATACGTTCGTGCCATTGTCAAGGAAACCCTAA 1198
| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 -ATCAGACTCAGACCTCTCCAAGCTCCCATACGTTCGTGCCATCATCAAGGAAACCCTAA 1198
Query 1199 GGATGCACCCACCTGGTCCTCTCCTCTCATGGGCTCGTCTCTCCATTCACGATACTCAGA 1258
||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |
Sbjct 1199 GGATGCACCCACCTGGTCCTCTCCTCTCATGGGCTCGCCGGTCCATTCACGACACTCAAA 1258
Query 1259 TCGGGACTCACTTTATACCCGCAGGAACCACTGCGATGGTTAACATGTGGGCTATAACCC 1318
|||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 TCGGAACCCACTTTATCCCCGCAGGAACCACTGCGATGGTAAACATGTGGGCTATAACCC 1318
Query 1319 ACGATGAAAAGGTCTGGCCGGAAGCTCATGAGTATAAACCAGAGAGGTTTCTTGGTGCGC 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 ACGATGAAAAGGTCTGGCCGGAAGCTCATGAGTATAAACCAGAGAGGTTTCTTGGTGCAC 1378
Query 1379 AAGAAAGTAATAACTTCCCCATCATGGGATCTGATCTGAGGCTTGCTCCCTTCGGTGCTG 1438
|||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AAGAAATTGATAATTTCCCCATCATGGGATCTGATCTGAGGCTTGCTCCCTTCGGTGCTG 1438
Query 1439 GACGTAGGGTCTGTCCCGGCAAGTCAATGGGTCTAGCCACCGTGGAGCTATGGCTAGCTC 1498
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1439 GACGTAGGGTCTGTCCCGGCAAGACGATGGGTCTAGCCACCGTGGAGCTATGGCTAGCTC 1498
Query 1499 AGTTGCTAGGAAGCTAT-AAGTGGGTCTCATGTGGTGAAGTGGATTTGAGTGAGACTTTG 1557
||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1499 AGTTGCTAGGAAGCT-TCAAATGGGTCCCATGTGGTGAAGTGGATTTGAGTGAGACTTTG 1557
Query 1558 AAGCTATCTTTGGAGATGAAGAACACTCTTGTCTGCAAGGCAATCCCTAGGGGTTAA 1614
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1558 AAGCTCTCTTTGGAGATGAAGAACACTCTTGTCTGCAAGGCAATCCCTAGGGTTTAA 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5