BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74120.1
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476555 jgi|Araly1|476555|fgenesh2_kg.2__1685__AT1G74120.1 2357 0.0
> Ahg476555 jgi|Araly1|476555|fgenesh2_kg.2__1685__AT1G74120.1
Length=1822
Score = 2357 bits (1276), Expect = 0.0
Identities = 1647/1818 (91%), Gaps = 57/1818 (3%)
Strand=Plus/Plus
Query 1 ATGGCCTCAAAACTCAAAACCTTCATCAATCTCCGTGACTACCCAATAAC--CC-TATTC 57
||||| |||||||| |||||||||| |||||||| || |||| ||||||| || || ||
Sbjct 1 ATGGCTTCAAAACTGAAAACCTTCACCAATCTCCATGGCTACACAATAACAACCTTACTC 60
Query 58 AACCAGATTCGAT--C-A-C-T---AT--C-C-TCACGAATTCTCACACCTATCAATCAA 105
|||||| ||||| | | | | || | | ||||||||||| |||||||||||||||
Sbjct 61 CACCAGAGTCGATCACTATCTTCAAATCCCTCTTCACGAATTCTTACACCTATCAATCAA 120
Query 106 TCTCACTACAGGAAACGAATTTTACTCGCGAATCTCCTTCAGAGGTATGGTTTCCCTCCT 165
|| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||
Sbjct 121 TCGCACTACAGGAAACGAATTTTACTAGCGAATCTTCTTCATAGGTATGGCTTCCCTCCT 180
Query 166 TCTTCTCTTCAGCACTTCCTCTCAAGAAACAATCACCTATTGAATTCGGACTTAGTAGAA 225
|||||||| || ||||||||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 181 TCTTCTCTCCAACACTTCCTCTCTAGAAACAATCACCTATTGAATTTGGATTTAGTAGAA 240
Query 226 ACCGAAATTTCTCTCGGCATCCTATTGTCATTGAAAATCCCTCAGAAATCACTCGTTTCG 285
|||||| |||||||| ||| | || || || ||||||||||||||||| |||||||||
Sbjct 241 ACCGAAGCATCTCTCGGTATCTTGTTATCGTTAAAAATCCCTCAGAAATCTCTCGTTTCG 300
Query 286 TTGATTTCCGATTGCCCTAATGTTCTGCGATCAGAGTTTCTGAGGAAATGGAGAGTTCCT 345
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 TTGATTTGCGATTGCCCTAATGTTCTGCGATCAGAGTTCCTGAGGAAATGGAGAGTTCCT 360
Query 346 CTGTCTAATTGCGGTAAACACGGTGTCGTCTCATCTTCTGCGATTAAGAGCGTCCTTGAA 405
|||| | |||||||||||||| | || ||||||||||| |||||||||||||||||||||
Sbjct 361 CTGTTTGATTGCGGTAAACAC-G-GT-GTCTCATCTTCCGCGATTAAGAGCGTCCTTGAA 417
Query 406 CATTCTAGTAGAATTGGGATTGGTCCAGATAAGTTTAATGAGTGCGTAAGGGTTTTGAAG 465
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 418 CATTCTAGTAGAATTGGGATTGGTCCAGATAAGTTTTATGAGTGCATAAGGGTTTTGAGG 477
Query 466 AGTTTAGGGTTTTGTGATAGTACTGTGAGTAGGATTTTAAGTTCATTCCCTGGTGTTCTT 525
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 478 GGTTTAGGGTTTTGTGATAGTACTGTGAGTAGGATCTTAAGTTCATTCCCAGGTGTTCTT 537
Query 526 TTAGTGAATGAGATTGAAATTCGTAGGAAGATTGAGTTTTTAGTTGGAATTGGCATTGCT 585
|||||||||||||||||||||| ||||||||||| |||||||||||||| | |||| ||
Sbjct 538 TTAGTGAATGAGATTGAAATTCACAGGAAGATTGAATTTTTAGTTGGAATCGACATTCCT 597
Query 586 CGAGATAACATTGAGAGGTTCTTTCACGTTTTTCCTGAAGTTCTAGGGATTGGTACTGAG 645
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 598 CGAGATAACATTGAGAGGTTTTTTCACGTTTTTCCTGAGGTTCTAGGGATTGGTACTGAG 657
Query 646 ACTAGACTTAAGCCATTGCTTGATGAGTTCATGAAGATGGGGTTTAGTAAGGATGATGTA 705
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||
Sbjct 658 ACTAGACTTAAGCCATTGCTTGATGAGTTCATAAAGATGGGTTTTAGCAAGGATGATATA 717
Query 706 AAGAAAGAGATTGCTAGAGAACCGAGAGTTCTTGGTTTGGAGTTAGGTGAGCTTCCGCGG 765
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 AAGAAAGAGATTGCTAGAGAACCAAGAGTTCTTGGTTTGGAGTTAGGTGAGCTTCCGCGG 777
Query 766 TGTTTGGAGTTGATCAACACATTGAAATGCCGGGAAGTGATTAGAGTTAGTATAATCAGC 825
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 778 TGTTTGGAGTTGATCAATACATTGAAATGCCGGGAAGTGATCAGAGTTAGTATAATCAGC 837
Query 826 GAAGGAGCATTTCGTGCTGGGTTTGAAGTGAAGCTCAGAGTTGATTGTTTATGCAAATAC 885
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 GAGGGAGCATTCCGTGCTGGGTTTGAAGTGAAACTCAGAGTTGATTGTTTATGCAAATAC 897
Query 886 GGGTTGATTCGTAGAGATGCATTCAAGGTTGTATGGAAAGAGCCGAGGGTGATCTTATAT 945
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 GGGTTGATTCGTAGAGATGCATTCAAGGTTGTGTGGAAAGAGCCGAGGGTGATCTTATAT 957
Query 946 GAGATAGAGGATATAGAGAAGAAGATTGAGTTTTTAACTAACAGAATGGGATTTCATATC 1005
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 GAGATAGAGGATATAGAGAAGAAGATTGAGTTTTTAACTAACAGAATGGGATTTCACATC 1017
Query 1006 AATTGTTTAGCTGATGTACCGGAGTATCTAGGGGTTAATCTTCAGAAGCAGATCGTTCCA 1065
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1018 AATTGCTTAGCTGATGTACCGGAGTATCTAGGGGTTAACCTCCAGAAGCAGATCGTTCCA 1077
Query 1066 CGGTACAATGTCATTGATTACTTGAAACTAAAAGGTGGGCTTGGCTGTGATATTGGATTG 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CGGTACAATGTCATTGATTACTTGAAACTAAAAGGTGGGCTTGGCTGTGATATTGGATTG 1137
Query 1126 AAAGGTTTGATCAAACCAAGCATGAAAAGATTTTATAATTTGTACGTGATGCCATACCCA 1185
||||||||||| |||||||| ||||||||||| |||||||| ||||||| ||||||||||
Sbjct 1138 AAAGGTTTGATAAAACCAAGTATGAAAAGATTCTATAATTTATACGTGAAGCCATACCCA 1197
Query 1186 GAGTGTGAAAGAATCTTTGGAAAGAGAAAAGAGAATGTCCGAGTGAATAAACGACATCCC 1245
||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct 1198 GAGTGCGAAAGAATCTTTGGCAAGAGAAAAGAGAATGCCCGAGTTAATAAACGACATCCC 1257
Query 1246 GCAGGGCTTTGGAAGCTTATGAAGCCGCCTAGCAATCTAACAACAAAAGAAGATGTGCAG 1305
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 1258 GCTGGGCTTTGGAAGCTTATGAAGCCACCTAGCTATCTAACAACAAAAGAAGATGTGGTG 1317
Query 1306 AACATGAAGTCCTTTATAGAGTCACTTGCTTAGTATG-TTGGATCTTGGACTTGCCTCTT 1364
||||||||||| ||||||||||||||||||||| ||| ||| | | || |||||||||
Sbjct 1318 AACATGAAGTCTTTTATAGAGTCACTTGCTTAGAATGCTTGAAACAAAGA-TTGCCTCTT 1376
Query 1365 ACTAGATTGAAAGA-GATCGGCCACTCTCTAGAGGGTTCTTGCTCCCTCACTTTGCTATG 1423
|||||| ||||| | ||||||||| ||||| |||| |||| ||| |||||||||||||
Sbjct 1377 ACTAGAGTGAAA-ATGATCGGCCATTCTCTTGAGGATTCTCGCTTCCTCACTTTGCTA-- 1433
Query 1424 AGCTGCTCTGAATTGATATGGGTTATCAGGAA-CTTTCAGTGA-CTATCGAATCTGATCT 1481
|| || ||| |||||| |||||||||||| ||| ||| || |||||||||| ||| |
Sbjct 1434 --CT-CT--GAAATGATATTGGTTATCAGGAAACTTCCAG-GAGCTATCGAATCCGATTT 1487
Query 1482 CAACTCGCTCGAGTTCATGGCTTGATTATTCAAAGGACAATGCATACTCCTGAATAA--G 1539
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1488 CAATTCGCTCGAGTTCATGGCTTGATTATTCAAAGGACAATGCATACTCCTGAAAAAAAG 1547
Query 1540 C-CATGCTCACTTCTCGTTGTGCATCTTGG-G----AAGACATCTACCAATGCCATTGCC 1593
|||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 1548 TACATGCTCACTTCTCGTTGTGCATCTTGGAGGCGGAAGACATCTACCAATGCCACTGCC 1607
Query 1594 TTCGTTTCCATGTCTCTGCCTGATAGATTTGC-TGAGCAAATGTAATTG-G-ACTTTGGT 1650
||||||||||||||||||||| || | || ||| | || | | | | | |||||
Sbjct 1608 TTCGTTTCCATGTCTCTGCCTT-TAC-T--GCCTGAT-AGATTTGCT-GAGCAAATTGGT 1661
Query 1651 TCTAAAAAGTCAAGTGCCATGTTCCAACTTCCAACTGTAACTACTAGTTAGGGATGTTAC 1710
||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct 1662 TCTTAAAAGTCAAGTGT-ATGTTCCAAC----A---GTAACTACTAGTTTGGGATGTTAC 1713
Query 1711 GTGGGCCGAGCCAGGCCGGCTAGTAGCCCGTTTTGGCAACTTTTATGCTAGGCCGATTCA 1770
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1714 GTGGGCCGAGCCAGGCCGGCCAGTAGCCCGTTTTGGCAACTTTTATGCTAGGCCGATCCA 1773
Query 1771 TCTGTTCCGTGATCCATC 1788
||||||||||||||||||
Sbjct 1774 TCTGTTCCGTGATCCATC 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74694970445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5