BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74130.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316359 jgi|Araly1|316359|fgenesh1_pm.C_scaffold_2001392 859 0.0
> Ahg316359 jgi|Araly1|316359|fgenesh1_pm.C_scaffold_2001392
Length=972
Score = 859 bits (465), Expect = 0.0
Identities = 829/996 (83%), Gaps = 59/996 (6%)
Strand=Plus/Plus
Query 77 ATGCATGCGATTTTCTGTCGCAGGGTCGCCGTCGGTT-GCTCTTCCCCGCAGCTAACCAA 135
|||||||||||||||| ||||||||||| |||| ||| ||| ||| ||||||| |||||
Sbjct 1 ATGCATGCGATTTTCTCTCGCAGGGTCGTCGTC-GTTGGCTTTTCTTCGCAGCTCACCAA 59
Query 136 ATTGGTGACGAAGCAGGCGAGCCAGAGTCGCCATTCCCTGAGCCA---TCTTCTTCC-T- 190
|||||||||||| ||| |||||||||||||||||| | ||||||| ||||||||| |
Sbjct 60 ATTGGTGACGAAACAGCCGAGCCAGAGTCGCCATTTCATGAGCCATCTTCTTCTTCCTTC 119
Query 191 T----T-TGATC-TC-TCTT------CCCGCTTTGTTCCTCCTTATGTTGTATCACGATC 237
| | | ||| || |||| ||||||||| | ||| | | | |||| || |
Sbjct 120 TACCCTCTCATCTTCTTCTTCAGCCACCCGCTTTG-T--TCC-T-T-CTCTATCGCGTTT 173
Query 238 GGCGAGAGTTCATGGATTCTTCGCAG-GGAAGTTGGGAAACACCAATCTGAAGCTGAAAT 296
|| || ||||||||| || ||||| | | |||||| ||||||||||| ||||||||||
Sbjct 174 GGAGAAAGTTCATGGCTTTTTCGC-GACCACGTTGGGGAACACCAATCTAAAGCTGAAAT 232
Query 297 TCGGAAATGTTATGGAATCTAGAGCTGGGTTCTTCAGTTCTGAGCTTCCTAGTCATGGA- 355
|| |||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 233 TCAGAAATGTTCTGGAATCTAGAGTTGGGTTCTTCAGTTCTCAGCTTCCTAGTAATGGAT 292
Query 356 T--TCGAGTCT-GGTGGTTTTACTGGGTTTCAAAAACGTGGATGGAAGTCTTGGATTAAT 412
| |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 293 TAATCGAGTCTAAG-GGTTTTACTGGGTTTCAAAAGCGTGGATGGAAGTCTTGGATTAAT 351
Query 413 GGAGCTAATGGTGTAGTTTTTGGATTGGTAATAGCTAATGCTGCTGTATTTACAATGTGG 472
||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||
Sbjct 352 GGAGCTAATGGTGTAGTTTTTGGGTTGATAATAGCTAATGTTGCAGTATTTACAATGTGG 411
Query 473 CGGGTTTTAGGCAAGGACAATATG-TGGATGGTGAAGA-ATTTTATGTTATCAAGGTACA 530
||||||| ||| ||| ||| |||||| |||| | ||||| || || ||| | | |
Sbjct 412 CGGGTTT----CAA--ACAG-ATGGTGGATGTTGAA-ACATTTTGTGCTAACAACGAAAA 463
Query 531 GTTTTATGACTGGACGTATACACACGCTGATCACTTCGGGTTTCAGTCATGTTGGAGCCA 590
|||||| || ||||||||||||||||||||| ||||||||||| ||| |||||||| |||
Sbjct 464 GTTTTACGAGTGGACGTATACACACGCTGATAACTTCGGGTTTTAGTAATGTTGGAACCA 523
Query 591 CTCATATCATCTTGAATATGATGGGGCTTTGCTACTTCGGAGCCAGAATTGCAAGAAGCT 650
||| ||||||||||| ||||| || || | |||||||||| ||||||||||||||| ||
Sbjct 524 ATCAAATCATCTTGAACATGATTGGACTCTACTACTTCGGAACCAGAATTGCAAGAACCT 583
Query 651 TTGGGCCGCGCTACCTTTTGAAGCTCTACTTTGCTGGAGCACTTGGTGGCTCTGTTTTCT 710
| ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 584 TGGGGCCGCTTTACCTTTTGAAGCTGTACTTTGCTGGAGCACTTGGTAGCTCTGTTTTCT 643
Query 711 TCTTGAGTAGTCATGCTCTCTCGGTTATATCACTCAAGGGCCAAAGAGTTGTC-CCTAAG 769
||||||||| ||||||||||| || || |||||||||| ||| |||||||| || |
Sbjct 644 TCTTGAGTAATCATGCTCTCTTGGCTA---CACTCAAGGGTCAAGGAGTTGTCACC-ATT 699
Query 770 GATCAATTAAAAGTCCCC-ATTGGGAAGCTGGGTGCTAATGGACCTGTGTATGCCATTAC 828
||| ||| |||| ||||| ||| | | |||||||||| ||||| |||||| |||||| |
Sbjct 700 GATAAATCAAAACTCCCCTATTCGCA-GCTGGGTGCTGATGGATCTGTGTTTGCCATCGC 758
Query 829 GCTTCTCGATATGCTCCTTTACCCAAAAGTTACTACATACTTTGGGTTGATGCTCCGAGT 888
||| ||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 759 GCTGCTCGATATGTTCCTCTACCCAAAAGTTACTACATACTTTGTTTTGATGCTCCGAGT 818
Query 889 GCCTGTATTTGCTGGAATCT-ATAGCTTAGGACTCAACAT-TATAAAGATGCTAGAGGGG 946
||||||| | | ||||||| || |||||||||| | || | ||||||| |||||||||
Sbjct 819 GCCTGTAATGGGGGGAATCTTATT-CTTAGGACTCGAGATGT-TAAAGATTCTAGAGGGG 876
Query 947 AAAAACAACAATACCTTGACTAGTT---TG-GATCAGTTGGGAGGAGTTGTAGTTGCAGT 1002
||||| ||||||| || | | || || | || | ||||||||||||| |||||||
Sbjct 877 AAAAATAACAATATCTCAAGAATTTCGGTGCG-TCTGATGGGAGGAGTTGTGGTTGCAGC 935
Query 1003 CATTGCGTGGGCAAGGATAAGGAAAGGTCGATTCTG 1038
||| ||||||||| ||||||||||||| ||||||||
Sbjct 936 CATGGCGTGGGCACGGATAAGGAAAGGCCGATTCTG 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5