BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74150.1
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316360 jgi|Araly1|316360|fgenesh1_pm.C_scaffold_2001393 2311 0.0
Ahg911676 jgi|Araly1|911676|Al_scaffold_0001_1930 171 2e-41
> Ahg316360 jgi|Araly1|316360|fgenesh1_pm.C_scaffold_2001393
Length=1704
Score = 2311 bits (1251), Expect = 0.0
Identities = 1418/1499 (95%), Gaps = 9/1499 (1%)
Strand=Plus/Plus
Query 1 ATGAGGTGGGAGAGGGTCCAACAAGTGGGTCTCGGTGATTCTTCTTCTTTCGGCCCCGGA 60
||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 1 ATGAGGTGGGAGAGGGTCCGACAAGTGGGTCTCGGTGATTCTTCTTC---CGGGCCCGGG 57
Query 61 AAGAGATGGGGACACACTTGTAACGCCATTAAAGGCGG-CAGATTTCTCTACGTATTT-G 118
|| |||||||||||||||||||||||||||||||| || | ||||||||||||| ||| |
Sbjct 58 AATAGATGGGGACACACTTGTAACGCCATTAAAGGTGGTC-GATTTCTCTACGT-TTTCG 115
Query 119 GTGGCTTTGGCAGAGACAATTGCTTAACAAATCAAGTTCATGTCTTCGACGCTGAGACGC 178
|||| ||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 116 GTGGTTTTGGCAGAGACAATTGCTTAACAAATCAAGTTCATGTCTTCGACACTCAAACGC 175
Query 179 AGATATGGATTCGACCTGAAATCAATGGCGTACCGCCCTGCCCGAGGGACAGTCATAGCT 238
|| |||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct 176 AGTTATGGACTCGACCTGTAATCAATGGTGTACCGCCCTGCCCGAGGGACAGTCACAGCT 235
Query 239 GTACAACAGTTGGTGATAACCTTTTTGTGTTTGGTGGTACTGATGGGACCAAATATCTCA 298
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 236 GTACAACAGTTGGGGATAACCTTTTTGTGTTTGGTGGTACTGATGGGACCAATTATCTCA 295
Query 299 ACGATGTGCACATCCTTGATACTTATTCACACACTTGGATACGTCCGGATATTAGAGGGG 358
||||||||||||| || ||||||| |||||| ||||||||| | ||||||||||||||||
Sbjct 296 ACGATGTGCACATTCTAGATACTTCTTCACATACTTGGATATGCCCGGATATTAGAGGGG 355
Query 359 AAGGACCAAGGGTTAGAGAGGCTCATAGTGCAGCGCTTGTTGACAAACGTCTTTTCATAT 418
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAGGACCAGGGGCAAGAGAGGCTCATAGTGCAGCGCTTGTTGACAAACGTCTTTTCATAT 415
Query 419 TTGGCGGCTGTGGGAAATCTTCTGATTCGGATGATGAAGTATTCTATAATGACCTTTACA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTGGCGGCTGTGGGAAATCTTCTGATTCGGATGATGAAGTATTCTATAATGACCTTTACA 475
Query 479 TACTTAATACAGAAACTTACATGTGGAAACGTGCTGTAACATCTGGGAAACCGCCCTCTG 538
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TACTTAATACAGAAACTTTTATGTGGAAACGTGCTGTAACATCTGGGAAACCGCCCTCTG 535
Query 539 CACGAGATAGCCACACTTGCTCAGCGTGGAAGAACAAAATCATTGTAGTAGGTGGTGAAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CACGAGATAGCCACACTTGCTCAGCGTGGAAGAACAAAATCATTGTAGTAGGTGGTGAAG 595
Query 599 ATTTGGATGACTATTATCTCTCTGATGTTCATATCCTTGATACAGATAAATTTGTTTGGA 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 596 ATTTGGATGACTATTATCTCTCTGACGTTCATATCCTTGATACAGATAAATTTGTTTGGA 655
Query 659 AGGAATTGAAAACTTCAGGACAGGTGTTAACACCTCGAGCCGGTCATGTAACTGTTGCAC 718
||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 656 AGGAATTGAGAACTTCAGGACAGTTGTTAACACCTCGAGCCGGTCATGTCACTGTTGCAC 715
Query 719 TTGAGAGGAACTTATTTGTCTTTGGAGGGTTTACGGATTCTCAAAATCTTTATGATGATC 778
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 TAGAGAGGAACTTATTTGTATTTGGAGGGTTTACGGATTCTCAGAATCTTTATGATGATC 775
Query 779 TATATGTGCTTGATTTGGAAACGGGTGTATGGTCCAAGGTTGTTGCTATGGTAGAAGGGC 838
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 776 TATATGTGCTTGATTTGGAAACGGGTGTATGGTCCAAGGTAGTTGCTATGGAAGAAGGGC 835
Query 839 CATCTGCTAGATTCTCTTCTGCAGCGGTTTGTTTAGATCCTTACAAGGCTGGTTCGTTTT 898
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 CATCTCCTAGATTCTCTTCTGCAGCGGTTTGTTTACATCCTTACAAGGCTGGTTCGTTTT 895
Query 899 TCTTTGTTGGTGGCTGCAATAAGAATCTTGAGCCGTTGGATGACATTTACTACTTACACA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCTTTGTTGGTGGCTGCAATAAGAATCTTGAGCCGTTGGATGACATTTACTACTTACACA 955
Query 959 CAGAAGGTAGATACGATGTCCGGTTTCATCAAAATCCAGGGAGATCGTCTCTAAGGAAAC 1018
|||||||| |||||||||||| |||| |||||||||||||| | | |||||| |||||||
Sbjct 956 CAGAAGGTGGATACGATGTCCAGTTTAATCAAAATCCAGGGCGGTTGTCTCTTAGGAAAC 1015
Query 1019 AAATGAAGCTAAAATGCCAAGGGCAGGAATTAACTGTGGCCAAAACCAACATTGACCATG 1078
||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||||
Sbjct 1016 AAATGAAGCTAAAATGCCATGGGCAGGATTTAGCTGTGGCCAGAACCAACATTGACCATG 1075
Query 1079 GAAGAGAGAATGTCCCTTTGAACATTGGCTATATTGATCAAAGAAAACCGATGTTTCAAG 1138
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1076 GAGGAGAGAATGTCCCTTTGAACATTGGCTCGATTGATCAAAGAAAACCGATGTTTCAAG 1135
Query 1139 CCAGGGTTACTGAAAACGCCCCTCTAGGTTACACTATAGAAACGATCATTGATGGAAAGG 1198
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1136 CCAGGGTTACTGAAAACGTCCCTTTAGGTTACACTATAGAAACGATCATTGATGGAAAGG 1195
Query 1199 TTCTTCGCGGTGTTTTGTTTTCAAACAGACACAGCTCTGTGCGAATTGCAGATTCAAGCA 1258
|||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 1196 TTCTTCGCGGTGTTTTGTTTTCAAACAGACACAGCTCTGTTCAAACCGCAGATTCAAGCT 1255
Query 1259 TTAGTAGTAGGCAAGTGGAAAGGCCTGCTACGTCAGATGGAGATTGTGATCATAGAGCAA 1318
|||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1256 TTAGTAATAGGCAAGTGAAAAGGCCTGCTACATCAGATGGAGATTGTGATCATAGAGCAA 1315
Query 1319 AGATACCAAGAACTTTTAGCAAGGATCCAGCTGGTAGTAGCCAACAAGCTGGTCCTACTG 1378
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1316 AGATGCCAAGAACTTTGAGCAAGGATCCAGCTGGTAGTAGCCAACAAGCTGGTCCTATTG 1375
Query 1379 ATCCTTCTGATGATACTAACAAGAAGGTTGCAGATTCAAATGATACGGACACACCCATGA 1438
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1376 ATCCTTCTGATGATACTAACAAGAAGGTTGCAGATTCACATGGTACGGACACACCCATGA 1435
Query 1439 TTGACACTG-TCGATGCTAATGTGAACATGGAGGGAACACATGAAGCAGAAACCGCTGC 1496
||||| ||| | ||||||||||||||||||| ||||||||| || ||| ||||||||||
Sbjct 1436 TTGACGCTGAT-GATGCTAATGTGAACATGGCGGGAACACAGGAGGCAAAAACCGCTGC 1493
Score = 187 bits (101), Expect = 2e-46
Identities = 171/201 (85%), Gaps = 20/201 (10%)
Strand=Plus/Plus
Query 1470 GGGAACACATGAAGCAGAAACCGCTGCCGTTACCAT-TGATGCCAAAGATCAAGATGCTT 1528
||||||||| || ||| |||||||||| |||||| | ||||| |||||||||||||||||
Sbjct 1494 GGGAACACAGGAGGCAAAAACCGCTGCTGTTACC-TCTGATGTCAAAGATCAAGATGCTT 1552
Query 1529 CTCAACTCGATAAGGGGATTGTGAACACAGATCCATTACCGGTTTCTCATGATCAGG--- 1585
|||||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1553 CTCAACTCGATACGAGGATTGTGAACACAGAACCATTACCGGTTTCTCATGATCAGGCGA 1612
Query 1586 -TG-A-A----T-G-----TGA--TATCAACAGATGCTGCAAAAGCTGATCCTGGAGTAG 1630
|| | | | | ||| |||||||||||||||| |||||||||||||||||||
Sbjct 1613 ATGTAGAGCCATTGAGAAATGAGATATCAACAGATGCTGCTAAAGCTGATCCTGGAGTAG 1672
Query 1631 ATTCATCGACACGAAAGCAAG 1651
|||||||||||| ||||||||
Sbjct 1673 ATTCATCGACACAAAAGCAAG 1693
> Ahg911676 jgi|Araly1|911676|Al_scaffold_0001_1930
Length=1353
Score = 171 bits (92), Expect = 2e-41
Identities = 135/155 (87%), Gaps = 5/155 (3%)
Strand=Plus/Plus
Query 19 CAACAAGTGGGTCTCGGTGATTCTTCTTCTTTCGGCCCCGGAAAGAGATGGGGACACACT 78
|||||||||||||||||||| | ||||||| ||| ||||| ||||| ||||||||||||
Sbjct 31 CAACAAGTGGGTCTCGGTGA--C-TCTTCTTCCGGGCCCGGTAAGAGGTGGGGACACACT 87
Query 79 TGTAACGCCATTAAAGGCGGCAGATTTCTCTACGTATTT-GGTGGCTTTGGCAGAGACAA 137
||||||||||||||||| || || |||||||| || ||| ||||||| ||||||||| ||
Sbjct 88 TGTAACGCCATTAAAGGAGGTAGCTTTCTCTATGT-TTTCGGTGGCTATGGCAGAGATAA 146
Query 138 TTGCTTAACAAATCAAGTTCATGTCTTCGACGCTG 172
|||| ||| |||||||| ||||| ||||||||||
Sbjct 147 TTGCCAAACCAATCAAGTCCATGTTTTCGACGCTG 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64143972580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5