BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74210.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909043 jgi|Araly1|909043|Al_scaffold_0002_2124 1877 0.0
> Ahg909043 jgi|Araly1|909043|Al_scaffold_0002_2124
Length=1176
Score = 1877 bits (1016), Expect = 0.0
Identities = 1126/1179 (96%), Gaps = 7/1179 (1%)
Strand=Plus/Plus
Query 83 ATGATTCTTACAAGATGCTTACCCTTGATATGGCTATCTCTACTTACTGTGTGTGCTGCT 142
||||||||| |||||||||| |||||||| ||||||||||||||||| |||||| ||||
Sbjct 1 ATGATTCTTGCAAGATGCTTGCCCTTGATTTGGCTATCTCTACTTAC--TGTGTG-TGCT 57
Query 143 GGGAGGACATTGCACCCTCTCCCTGTTAAAGGACCCAAAACTGTCAAGCTTCAACTTCAG 202
||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 58 GGGAGGACATTGCACCCTCTCCCTGGTAAAGGACCCAAAAGTGTCAACCTTCAACTTCAG 117
Query 203 ACTTCACGTCCTTATAACATCGCACACAGAGGTTCCAATGGAGAGATCCCAGAAGAAACT 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ACTTCACGTCCTTATAACATCGCACACAGAGGTTCCAATGGAGAGATCCCAGAAGAAACT 177
Query 263 ACAGCTGCATACTTGAAAGCAATTGAAGAAGGCACAGACTTCATAGAAACAGATATCTTA 322
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 178 ACTGCTGCATACTTGAAAGCAATTGAAGAAGGTACAGACTTCATAGAAACAGATATCTTA 237
Query 323 TCATCCAAAGATGGTGTGCTCATATGTTTCCATGATTGTATTCTCGACGAAACAACCAAT 382
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct 238 TCATCCAAAGATGGTGTGCTTATATGTTTCCATGATTGTATCCTCGACGAAACAACCGAT 297
Query 383 GTTGCGAGCCACAAGGAGTTTGCAGATCGTAAAAGGACATATGATGTCCAAGGATTCAAC 442
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 298 GTTGCAAGCCACAAGGAGTTTGCTGATCGTAAAAGGACATATGATGTGCAAGGATTCAAC 357
Query 443 ATTACTGGCTTTTTCACTTTTGATTTTACACTTAAAGAACTAAAGCAACTACGTATAAAG 502
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 358 ATCACTGGCTTTTTCACTTTTGATTTTACACTCAAAGAACTAAAGCAACTACGTACAAAA 417
Query 503 CAGCGATATGCTTTTCGGGATCAGCAATACAACGGAATGTACCCTATCATTACATTTGAG 562
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 418 CAGCGATATACTTTTCGGGACCAGCAATACAACGGAATGTATCCTATCATTACATTTGAG 477
Query 563 GAATTTC-TTACCATTGCTCGGGATGCTCCAAGAGTTGTTGGAATATATCCTGAGATTAA 621
||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 478 GAA-TTCATTGCCATTGCTCGGGATGCTCCAAGAGTTGTTGGGATATATCCTGAGATAAA 536
Query 622 AAATCCAGTTTTAATGAACCAGCATGTCAAATGGCCTGGTGGTAAGAAATTTGAGGATAA 681
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 537 AAATCCAGTTTTAATGAACCAGCATGTCAAATGGCCTGGTGGTAAGAGATTTGAGGATAA 596
Query 682 AGTTGTGGAGACACTTAAGAAGTATGGGTATGGAGGCTCGTATTTGTCCAAGAAGTGGTT 741
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 597 AGTTGTGGAGACACTTAAGAAGTATGGGTATGGAGGCTCATATTTGTCCAAGAAGTGGTT 656
Query 742 GAAAAAACCACTATTTATTCAGTCATTTGCCCCAACTTCACTCGTGTACATATCAAACTT 801
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 GAAAAAACCATTATTTATTCAGTCATTTGCCCCAACTTCACTCGTGTACATATCAAATTT 716
Query 802 GACAGACTCGCCGAAAGTCCTTCTAATAGACGATGTTACCATGCCAACGCAAGACACTAA 861
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 717 GACAGACTCGCCGAAAGTCCTTCTAATAGACGATGTTACCATGCCGACGCAAGACACTAA 776
Query 862 CCAGACATATGCAGAGATCACATCAGATGCGTATTTCGAATACATCAAGCAATATGTTGT 921
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 CCAGACATACGCAGAGATCACATCAGATGCGTATTTCGACTACATCAAGCAATATGTTGT 836
Query 922 GGGTATCGGACCATGGAAGGATACAATTGTTCCGGTAAACAACAACTATGTGCTAGCCCC 981
||||||||||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||
Sbjct 837 GGGTATCGGACCATGGAAGGATACAATAGTTCCAGTAAATAGCAACTATATGCTAGCCCC 896
Query 982 CACAGATTTGGTCAAAAGAGCTCACGCACACAATCTGCAGGTGCATCCCTATACGTACAG 1041
|||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 897 CACAGATTTGGTCAAAAGAGCTCACGCACATAATCTACAGGTGCATCCATATACGTACAG 956
Query 1042 GAATGAACACGAATTCTTACACTATAACTTTAGCCAAGACCCGTATAAGGAGTACGACTA 1101
|||||||||||||| |||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 957 GAATGAACACGAATACTTACACTTTAACTTTAGCCAAGACCCATATAAGGAATACGACTA 1016
Query 1102 CTGGATCAATGAGATTGGAGTTGATGGACTCTTCACTGATTTCACAGGCAGCCTCCATAA 1161
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTGGATCAATAAGATTGGAGTTGATGGACTCTTCACTGATTTCACAGGCAGCCTCCATAA 1076
Query 1162 CTTTCAAGAATGGACATCTCCATTACCTGATACCTCCAAGTCTCCACGACAGCTTCTTAG 1221
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 1077 CTTTCAAGAATGGACATCTCCATTACCTGATAGCTCCAAGTCTCCACGACAGCTT-TTGG 1135
Query 1222 -TCAAATTGCCTCATTGGTCCTCCCTTATGCAAAGGCTT 1259
||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTCAAATTGCCTCATTGGTCCTCCCTTATGCAAAGGCTT 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5