BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74220.1
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476559 jgi|Araly1|476559|fgenesh2_kg.2__1689__AT1G74220.1 1303 0.0
> Ahg476559 jgi|Araly1|476559|fgenesh2_kg.2__1689__AT1G74220.1
Length=975
Score = 1303 bits (705), Expect = 0.0
Identities = 895/981 (91%), Gaps = 36/981 (4%)
Strand=Plus/Plus
Query 1 ATGGAATCATCACAAGAACAAAGTTTCTTTAGCCCCACGAACCAAAGCTCGAGAAACTTA 60
||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||| ||
Sbjct 1 ATGGAATCATCTCAAGAACAAAGTTTTTTTAACCCCACGAACCAAAGCTCGAAAAACCTA 60
Query 61 GCATCTAAACCTGAAACAGAAGATCCAATCAT-AAGACTTTCTTCTTCGTCTTCCTCTTC 119
|| ||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 61 GCTTCTAAACCTGAGACAGAAGATCCAATC-TCAAGACTTTCTTCTTCTTCTTCCTCTTC 119
Query 120 TTGTTCTTCCATAGAAGCCGAACCAAGACCTGATCAGAATCACAACCACAACAATGTAGA 179
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 120 TTGTTCTTCCATAGAAGCCGAACCAAGACCTGATCAGAATC-TAA--ACAACAATGTAGA 176
Query 180 GCAATCTCCTCCGACACAAGTCATGGAAAGAT-------caaca-aacaac-acaacaac 230
|||||||||||||||||| ||||||||||||| ||||| |||||| ||||||||
Sbjct 177 GCAATCTCCTCCGACACAGGTCATGGAAAGATCCACAAACAACACAACAACAACAACAAC 236
Query 231 aacGACGACCTCTACCCCTAATACACCTCCTTACAGAATCCCTTCACATGTTTTCGCGAG 290
||| ||||| || | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 AACAACGACTTCGAGCCCTAATACACCTCCTTACAGAATCCCTTCACATGTTTTCGCAAG 296
Query 291 AACAACCTCTACAGCTCCAGAATGGAGTACTATCTCCAATGAATCTCTTTTCAGCATCCA 350
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 297 AACAACCTCTACAGCTCCAGAATGGAGCACTATGTCCAATGAATCTCTTTTCAGCATCCA 356
Query 351 TATGGGTAACAATAGCTTCACCGGTGGAGATTATTTCAAATCCGGCGAACTCACGTTTCC 410
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 357 CATGGGTAACAATAGCTTCACGGGTGGAGATTATTTCAAATCCGGCGAGCTCACGTTTCC 416
Query 411 TCAGCCTCCTTCACCAATAACTTCTCCTTTGCCTTCTCCTTTACCATCTACGCCCCACAA 470
|||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||||
Sbjct 417 TCAGCCTCCTTCACCAATAACTCCTCCTTTGCCTTCGCCTTTACCATCCCCTCCCCACAA 476
Query 471 CGTGAACCAAGGAGGAGCCGTAGGAGCTGCTGCGGAGGTAAAAACTCCGGTGGATATAGG 530
|| |||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 477 CGCGAACCAAGGAGGAGCCGTAGGACCTGCGGCTGAGGTAAAAACTCCGGTGGATATAGG 536
Query 531 CAAGAAAGCAGCTGAAACAGATAAAGCTTACCGCGCAAGTAAAGAAGACGAACAAAAAGC 590
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 537 CAAGAAAGCAGCTGAAACAGATAAAGCTTACCGCGCAAGTAAAGAAGACGAGCAAAAAGC 596
Query 591 TGCAGCAAGTATAAGAGAGGTTATCATGGCTAATGAAGCTGCTAACAA---CAACAACAA 647
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 597 TGCAGCAAGTATAAGAGAGGTTATCATGGCTAATGAAGCAGCTAACAAAGACAACAACAA 656
Query 648 -AAC--CAATA--AA--C---TA----G-ATCGTTCTGTTTCTCGTCGCTCAGAAAATTT 692
||| ||||| || | || | |||||||||||||||||||||||||| ||||
Sbjct 657 TAACAACAATACCAAAACCAATAAACTGGATCGTTCTGTTTCTCGTCGCTCAGAAGATTT 716
Query 693 AAGTGTCAAGTCTTTCGCTTTTCCAGTAATGGGGAATGCAGACAAAGGCGGGTTACAAGG 752
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 AAGCCTCAAGTCTTTCGCTTTTCCAGTATTGGGGAATGCAGACAAAGGCGGGTTACAAGG 776
Query 753 TTCCACGCCTGAAAAGAAGCAGAGGAAT-CCTTCGCAGCCAGAGACACCGAAGATTTCCA 811
|||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||| |
Sbjct 777 TTCCACGCCTCAAAAGAAGCAG-GGAAAGCCTTCGCAGCCAGAGACACCGCAGATTTCGA 835
Query 812 CTGAAGCTGAAGGAGATGTAGGATTGAAGAAAGAGGAAGCTCCTAAACCAGTAGCTCCTA 871
||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 CTGAAACTGAAAGAGATGAAGGATTGAAGAAAGAGGAAGCTCCTAAATCAGTAGCTCCTA 895
Query 872 AAACAGAAGCGGACCGTGCCTCTGATCGCAACCCCAAATGGCTCTCTTGCTTCCCTTGCT 931
|| |||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||| |
Sbjct 896 AAGCAGAAGCGGAACGTGCTTCTAATCGCAACCCCAACTGGCTCTCTTGCTTCCCTTGTT 955
Query 932 GTACAACCT-CTTGTGTCTAA 951
| ||||||| || ||||||||
Sbjct 956 GCACAACCTTCT-GTGTCTAA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35301821142
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5