BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74230.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476560 jgi|Araly1|476560|fgenesh2_kg.2__1690__AT1G74230.1 1528 0.0
> Ahg476560 jgi|Araly1|476560|fgenesh2_kg.2__1690__AT1G74230.1
Length=1072
Score = 1528 bits (827), Expect = 0.0
Identities = 1002/1083 (93%), Gaps = 25/1083 (2%)
Strand=Plus/Plus
Query 1 GAGAATTGAAAGACGCTTCGAGAGAGATAGATCATCTCCGTTAAACCCTAGCGATTGGAA 60
||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 1 GAGAATTGAAAGACGCTTC--CAGAG--AGATCATCTCCGTTAAACCCTAGAGATTGGAA 56
Query 61 TACGGATATACTCCAAATGGCTTTCTTAAGTAAAGTTGGAAGGTTATTCAGTCAGACCAG 120
||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 57 TACAGATATACACCAAATGGCTTTCTTAAGTAAAGTTGGAAGGATATTTAGTCAGACCAG 116
Query 121 CAGCCATGTCACTGCCTCTAGCTCGATGCTACAGAGCATCCGTTGCATGTCTTCATCAAA 180
|||||||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 117 CAGCCATGTCGCTGCCTCTAGCTCAATGCTTCAGAGCATCCGCTGCATGTCCTCATCAAA 176
Query 181 AATCTTTGTTGGAGGTATCTCCTACAGCACTGATGAGTTTGGCTTAAGAGAAGCTTTTAG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 177 AATCTTTGTTGGAGGTATCTCCTACAGCACTGATGAGTTTGGCTTAAGAGAAGCTTTTGG 236
Query 241 CAAATATGGAGAAGTTGTTGATGCAAAGATTATTGTGGACCGTGAAACAGGCAGATCTAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAAATATGGAGAAGTTGTTGATGCAAAGATTATTGTGGACCGTGAAACAGGCAGATCTAG 296
Query 301 GGGCTTTGCTTTCGTAACATTTACTTCGACTGAGGAGGCTAGTAATGCCATGCAATTGGA 360
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 297 GGGTTTTGCTTTTGTAACATTTACTTCCACTGAGGAGGCTAGTAATGCCATGCAATTGGA 356
Query 361 TGGACAGGACCTTCATGGTCGAAGAATTAGGGTGAATTATGCAACTGAAAGAGGAAGTGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TGGACAGGACCTTCATGGTCGAAGAATTAGGGTGAATTATGCAACTGAAAGAGGAAGTGG 416
Query 421 GTTTGGAGGAAGGGGATTCggtggtcctggtggtggttatggtgcttcagatggtggtta 480
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 417 ATTTGGAGGAAGGGGATTCGGTGGTCCTGGTGGTGGTTACGGTGCTTCAGACGGTGGTTA 476
Query 481 tggtgctccagctggtggttatgg-aggtggtgCCGGTGGTTACGGAGGCAACTCTTCTT 539
|||||||||||||||||||||||| | | || |||||||| |||||||||||||| |
Sbjct 477 TGGTGCTCCAGCTGGTGGTTATGGTAC-TCCAGCTGGTGGTTATGGAGGCAACTCTTCGT 535
Query 540 ATAGtggaaatgctgggggtggtggtggttatggtggtaactcttcctatggtggaaatg 599
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 536 ATGGTGGAAATGCTGGGGGTGGTGGTGGTTATGGCGGTAACTCTTCCTATGGTGGAAATG 595
Query 600 ctgg---tggt--t----atggaggtAACCCTCCTTATAGTGGCAATGCTGTTGGTGGTG 650
|||| |||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 596 CTGGGGGTGGTGGTGGTTATGGAGGTAACCCTCCTTATACTGGCAATGCTGTTGGTGGTG 655
Query 651 GCGGTGGCTATGGAAGCAATTTTGGCGGCGGCGGTGGATATGGTGTTGCAGGTGGTGTTG 710
| ||||| |||||||||||| ||||| | || || |||||||||||||| ||||||||||
Sbjct 656 GTGGTGGTTATGGAAGCAATCTTGGCAGTGGTGGCGGATATGGTGTTGCGGGTGGTGTTG 715
Query 711 GTGGAAGTGAAAACTTTGCCCAAGGCAGCTCCACTAATGCTGGCTTTGATGACAAGTTTG 770
|||||||||| ||||||||||||||||| ||| | ||||||||||||||| |||||||||
Sbjct 716 GTGGAAGTGACAACTTTGCCCAAGGCAGTTCCTCAAATGCTGGCTTTGATAACAAGTTTG 775
Query 771 AG-AGCAACCAACCATTAGGCAATGATACGGATCATCAGACT-GAAAGCGGTTTGGGAGG 828
| |||||||||||||||||||||||||||||||||||| || |||||||| || || ||
Sbjct 776 -GCAGCAACCAACCATTAGGCAATGATACGGATCATCAG-CTTGAAAGCGGATTCGGCGG 833
Query 829 CGATGAACAATTTGGTGGCAGTGACAATCAATTTGGAGATGCAGAGAACGGTAACACAGA 888
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 834 CGATGAACAATTTGGTGGCAGTGACAATCAATTTGGTGATGCAGAGAACGGTAAAAGAGA 893
Query 889 GAATGGTCCAGTTGGGTTTGATCAAACTGACGATGGCGATGTTGCCAAGAGAGCCTAGTC 948
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 894 GAATGGTCCAGATGGGTTTGATCAGACTGACGATGGCGATGTTGCCAAGAGAGCCTAGTC 953
Query 949 TCCACGATGT-TGTGCCGTGTATGTTTACGTCATGGAACTTTTGTTTTGCAGTTTCAGTC 1007
|||||||||| | | ||||||| |||| |||| ||||||||||||||||| |||||||||
Sbjct 954 TCCACGATGTGTCT-CCGTGTACGTTTGCGTCCTGGAACTTTTGTTTTGCGGTTTCAGTC 1012
Query 1008 TAAAACTTACG-AACTTTCTTAATCTCTCTATTTAACGTTTGAGGTTGTTTATCATGTAG 1066
|||| |||| | || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1013 TAAA-CTTATGGAAGTTTCTTAATCTCT--ATTTAACGTTTGAGGTTGTTTATCATGTAG 1069
Query 1067 AGA 1069
|||
Sbjct 1070 AGA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5