BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74240.1
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339621 jgi|Araly1|339621|fgenesh1_pg.C_scaffold_2001720 1807 0.0
> Ahg339621 jgi|Araly1|339621|fgenesh1_pg.C_scaffold_2001720
Length=1095
Score = 1807 bits (978), Expect = 0.0
Identities = 1057/1096 (96%), Gaps = 2/1096 (0%)
Strand=Plus/Plus
Query 42 ATGGCGACGAAGAGCTCGGATTCGAGCCATAAGCAATCTCCTCCGAGTTTTCGTAAGAGC 101
||||||||||||||| |||||||||||||| ||||| |||||| ||||| ||||||||
Sbjct 1 ATGGCGACGAAGAGCCCGGATTCGAGCCATGAGCAACCTCCTCTGAGTTACCGTAAGAGA 60
Query 102 GTCGAAATCAAAGCCACGCATGATCAATTTTTCGTTTGGAGAGAGTTCTTATGGGGAGGT 161
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GTCGAAATCAAAGCCACGCATGATCAATTTTTCGTGTGGAGAGAGTTCTTATGGGGAGGT 120
Query 162 ATTGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTTGATACTCTCAAAACTAGACTT 221
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 ATAGCTGGAGCTTTTGGAGAAGGAATGATGCATCCCGTGGATACTCTCAAAACCAGACTT 180
Query 222 CAAAGTCAAATTATCATGAATGCAACTCAGAGACAAAAGAGTATTCTACAAATGCTCCGA 281
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CAGAGTCAAATTATCATGAATGCAACTCAGAGACAAAAGAGTATTCCACAAATGCTCCGA 240
Query 282 ACTGTCTGGGTTGGTGATGGCTTAAAAGGCTTTTATAGGGGCATTGCTCCTGGAGTCACT 341
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACGGTCTGGGTTGGTGATGGATTAAAAGGCTTTTATAGGGGCATTGCTCCTGGAGTCACT 300
Query 342 GGATCTCTTGCCACTGGAGCAACTTACTTTGGTTTTATTGAGTCAACAAAGAAATGGATT 401
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 301 GGATCTCTTGCCACTGGAGCAACCTACTTTGGTTTTATTGAGTCCACAAAGAAATGGATT 360
Query 402 GAAGAGTCTCATCCCAGCTTAGCAGGG-CACTGGGCGCATTTTATAGCAGGAGCAGTTGG 460
|||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||
Sbjct 361 GAAGAGTCTCATCCCAGCCTAG-GGGGCCACTGGGCGCATTTTATAGCTGGAGCAGTTGG 419
Query 461 CGATACACTTGGTTCTTTCATATATGTTCCTTGTGAAGTCATAAAGCAGCGAATGCAAAT 520
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGATACACTTGGTTCTTTCGTATATGTTCCTTGTGAAGTCATAAAGCAGCGAATGCAAAT 479
Query 521 TCAAGGCACTAGTAGCTCCTGGAGCTCTTATATTTCGAGGAACAGCGTTCCGGTGCAACC 580
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 480 TCAAGGCACTAGTAGCTCCTGGAGCTCTTTTATTTCGAGGAACAGCGTTCCGGTGAAACC 539
Query 581 AAGAGGTGACATGTATGGTTATTACACTGGAATGTTCCAGGCTGGATGCTCAATATGGAA 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGAGGTGACATGTATGGTTATTACACTGGAATGTTCCAGGCTGGATGCTCAATATGGAA 599
Query 641 AGAGCAAGGGCCAAAAGGACTATATGCTGGATATTGGTCTACACTAGCGAGGGATGTGCC 700
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 600 AGAGCAAGGGCCAAAAGGACTGTATGCTGGATATTGGTCTACACTAGCGAGGGACGTGCC 659
Query 701 TTTTGCTGGTCTTATGGTAGTGTTTTATGAAGGATTAAAGGATCTAACAGATCAAGGAAA 760
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 660 TTTTGCTGGTCTTATGGTAGTGTTTTACGAAGCATTAAAGGATCTAACAGATCAGGGAAA 719
Query 761 GAAAAAGTTTCCACAGTATGGAGTCAACAGTTCGATAGAGGGTCTCGTATTGGGAGGATT 820
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAAAAGTTTCCACAATATGGAGTCAACAGTTCGATAGAGGGTCTCGTATTGGGAGGATT 779
Query 821 AGCTGGTGGACTAAGTGCTTATCTCACAACTCCACTGGATGTTGTAAAAACAAGACTGCA 880
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 AGCTGGTGGACTAAGCGCTTATCTCACAACTCCTCTGGATGTTGTAAAAACAAGACTGCA 839
Query 881 AGTGCAAGGATCAACGATCAAGTACAAGGGATGGTTGGATGCAGTTGGACAGATATGGAG 940
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 AGTGCAAGGATCAACGATCAAGTACAAGGGATGGTTGGATGCAGTTGGGCAGATATGGAG 899
Query 941 GAAGGAAGGTCCACAAGGGTTTTTCCGAGGAAGCGTCCCAAGGGTCATGTGGTATCTTCC 1000
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 GAAGGAAGGTCCAGAAGGGTTTTTCCGGGGAAGCGTCCCAAGGGTCATGTGGTATCTTCC 959
Query 1001 GGCCTCGGCACTCACCTTCATGGCCGTTGAGTTCCTTAGAGATAACTTCAGAGAGAAAAG 1060
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 960 GGCCTCGGCACTCACCTTCATGGCCGTTGAATTCCTTAGAGATAATTTCAGAGAGAAAGG 1019
Query 1061 TAATAATAATAACAATGTCGTCTCAAATTTGAGCATAGAGAGGAAAACATCTTCTACTTC 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TAATAATAATAACAATGTCGTCTCAAATTTGAGCATAGAGAGGAAAACATCTTCTACTTC 1079
Query 1121 AGTGCATGAAGGTTAG 1136
||||||||||||||||
Sbjct 1080 AGTGCATGAAGGTTAG 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5