BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74250.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339622 jgi|Araly1|339622|fgenesh1_pg.C_scaffold_2001721 2843 0.0
> Ahg339622 jgi|Araly1|339622|fgenesh1_pg.C_scaffold_2001721
Length=1899
Score = 2843 bits (1539), Expect = 0.0
Identities = 1792/1911 (94%), Gaps = 30/1911 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTCGTCTCGTTCGGAGAAACGATGTCACTACGAGGTTCTCGGTATCAGCAAG 60
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCTTCATCTCGCTCGGAGAAACGATGCCACTACGAGGTTCTCGGTATCAGCAAG 60
Query 61 GAATCTTCGCCGGACGAGATTCGATCCTCTTATCGGCGTTTAGCTCTGCAGCGTCACCCC 120
||||| |||||||||||||||||||||||||| |||||||||||| |||||||||| |||
Sbjct 61 GAATCCTCGCCGGACGAGATTCGATCCTCTTACCGGCGTTTAGCTTTGCAGCGTCATCCC 120
Query 121 GACAAGCTAATGAAAGCCGCTGGATTATCGGAGGCTGAAGCCACCGCCCAGTTCCAAGAG 180
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GACAAGCTTATGAAAGCCGGTGGATTATCTGAGGCTGAAGCCACCGCCCAGTTCCAAGAG 180
Query 181 CTCGTTCACGCTTACGAGGTTCTATCCGATCCCAAGGAGCGAGCCTGGTATGATTCTCAT 240
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 181 CTCGTTCACGCTTACGAGGTTTTATCAGATCCCAAGGAGCGAGCCTGGTATGATTCCCAT 240
Query 241 CGATCTCAGATTTTATTTGCTGACCATAGTTCAGCCGGTGGCTCG-AA-------G--T- 289
|||||||||||| |||| ||||||||||| ||||||||||||||| || | |
Sbjct 241 CGATCTCAGATTCTATTCGCTGACCATAGCTCAGCCGGTGGCTCGAAATCTGGTGGTATG 300
Query 290 -CTGGTGGCTCTGTTCCGGATCTATTCGCTTTCTTCTCTCCCACTGTATATTCTGGATAC 348
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 CCTGGTGGCTCTGTTCCGGATCTATTCGCTTTCTTCACTCCCACTGTATATTCTGGATAC 360
Query 349 TCAGATACCGGGAAAGGATTTTACAAGGTGTATTACGATGTGTTTAATAGTGTTTACCTC 408
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAGATACCGGAAAAGGATTCTACAAGGTGTATTACGATGTGTTTAATAGTGTTTACCTC 420
Query 409 AACGAGATTAAGTTCGCGAGAACGTTAGGTTTGAGGATGGATTCTGTGAGGGAAGCTCCG 468
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 421 AACGAGATTAAGTTCGCGAGAACTTTAGGTTTGAGGTTGGATTCTGTGAGGGAAGCTCCG 480
Query 469 ATTATGGGGAATCTAGAGTCTCCTTATGCTCAGGTGACGGCGTTTTATAATTACTGGTTA 528
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 481 ATTATGGGGAATCTAGAGAGTCCTTACGCTCAGGTGACGGCGTTTTATAATTACTGGTTA 540
Query 529 GGTTTTTGCACTGTTATGGATTTCTGCTGGGTGGATGAGTATGATGTGATGGGTGGACCG 588
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 541 GGTTTTTGCACTGTTATGGATTTCTGCTGGGTGGATGAGTACGATGTGATGGCTGGACCG 600
Query 589 AATCGAAAGTCGAGAAGGATGATGGAGGAGGAGAATAA-AAAGTCGAGAAAGAAGGCGAA 647
|||||||||||||||||| |||||||||| |||||||| || || ||| |||||||||||
Sbjct 601 AATCGAAAGTCGAGAAGGTTGATGGAGGATGAGAATAAGAAGGT-GAGGAAGAAGGCGAA 659
Query 648 GAGAGAGTATAATGATACTGTGAGGGGTTTGGCAGAGTTTGTGAAGAAGAGGGATAAGAG 707
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 660 GAGAGAGTATAATGAGACTGTGAGGGGTTTGGCTGAGTTTGTAAAGAAGAGGGATAAGAG 719
Query 708 AGTGATTGACATGTTGGTgaagaagaatgcagagatggagaagaagaaggaagaggagag 767
||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 720 AGTGATTGACATGATGGTGAAGAAGAATGCAGAGATGGAGAAGAAGAAAGAGGAGGAGAG 779
Query 768 ggaaaggaagaagaagatggagaaggagagattggagagagCTATGAATTACGAGGAGCC 827
||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 780 GGAGAGGAAGAAGAAGATGGAGAAGGAGAGATTGGATAGAGCTATGAACTATGAGGAGCC 839
Query 828 TGAATGGGCAAAGGCTCATGAGGGAGAAGATGAAGGGGCAGGACTCAGTGAATTGGAAGA 887
|||||||||||||||||| |||||||| || ||||||||||| ||| || |||||||||
Sbjct 840 TGAATGGGCAAAGGCTCAGGAGGGAGAGGAGGAAGGGGCAGGGTTCAATGTATTGGAAGA 899
Query 888 GGAGGATGATGATGCGAAGAGGAAGAATGAGCAGCTCTATTGTATTGTTTGTAGCAAGAA 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGAGGATGATGATGCGAAGAGGAAGAATGAGCAGCTCTATTGTATTGTTTGTAGCAAGAA 959
Query 948 GTTCAAAAGTGAGAAGCAGTGGAAAAACCACGAACAGTCGAAGAAGCATAAAGAGAAAGT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTTCAAAAGTGAGAAGCAGTGGAAAAACCACGAACAGTCGAAGAAGCATAAAGAGAAAGT 1019
Query 1008 GGCGGAGCTGAGAGAGTCATTCACTGATTATGAAGAGGAAA-ATGAAGAGGAAGAGATTG 1066
||||||| ||||||||||||||||||||||||||||||||| | || |||||||||| ||
Sbjct 1020 GGCGGAGTTGAGAGAGTCATTCACTGATTATGAAGAGGAAATA-GAGGAGGAAGAGACTG 1078
Query 1067 ATGGGCCCTTGGACTCACCTGAAAGTGTAGAGGAGCTGCATGAGAAGCTTCAGGAGGAGT 1126
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATGGGCCATTGGACCCACCTGAAAGTGTAGAGGAGCTGCATGAGAAGCTTCAGGAGGAGT 1138
Query 1127 TAAATATCGACAATGAAGAAAGA-GATGTTAAGAAGGAAGTTGTAGGTGAAGCTGATGAA 1185
||||||||||| ||||||||| | |||||| || ||||||||||||||||||||||||||
Sbjct 1139 TAAATATCGACGATGAAGAAA-ATGATGTTGAGGAGGAAGTTGTAGGTGAAGCTGATGAA 1197
Query 1186 ACTGATGATGAGTATTTTGTGGCAGAGGAAGATATGCAAGGATCTAGTGAAAGTGAGGAT 1245
||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct 1198 GCTGATGAGGAGTATTTTGTGGCAGAGGAGGTTATGAAAGGATCTAGTGAAAGTGAGGAT 1257
Query 1246 GAGGATGACGAGATGACTCTACTCAAGAAAATGGTATCTGGACAGAAGAATAAGC-AAAA 1304
||||||||||||||||||||||||||||||||||||||||||||||| || || | ||||
Sbjct 1258 GAGGATGACGAGATGACTCTACTCAAGAAAATGGTATCTGGACAGAAAAAAAAACGAAAA 1317
Query 1305 GAATGTCGTATCAAAGGAAGAAGATGAAGATGAAACTGAAGTCGAGATCGA-AGGTGACA 1363
|||||||||||||||||||||||||||| | | |||||||||||||| || |||||
Sbjct 1318 -AATGTCGTATCAAAGGAAGAAGATGAAG-T----C-GAAGTCGAGATCGAGAG-TGACA 1369
Query 1364 CAGCAGAGTTTAGCGAATTTGATAACCAGAAAAGCACAGGTAGGAATAAAGAAGCTAAGG 1423
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 1370 CAGCAGAGTTTAGCGAATTTGATTACCAGAAAAACACAGGTAGGAATAAAGAAGCTAACG 1429
Query 1424 AAGAGAGAAATAAACAGAATGCTGGAAATGACATGGCAGATGACACCAGCAAAGTACAGA 1483
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1430 AGGAGAGATTTAAACAGAATGCTGGAAAAGACATGGCAGATGACACCAGCAAAGTAAAGG 1489
Query 1484 TACCTGGAGAGGGCGGTAATCCAGATGAAAACATGAATGCAACGGAGTCAGCTTCCGGAG 1543
|||||||||| | ||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1490 TACCTGGAGACGACGGTAATCCAGATGAAAACGTGAATGCAACGGACTCAGCTTCCGGAG 1549
Query 1544 CACTTGCGGATTCTCAGAAGGATGAGGCAAATTCAATGGAGTATGATAATAGGAAGAGCA 1603
|| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1550 CATTTGAGGATTCTCAGAAGGATGAGGCAAATTCAATGGAGTATGATAACAGGAAGAGCA 1609
Query 1604 CAGGCAGGAGGCGCAGAAGCAAAAAGGGCAAGGATAAGAATAACCAGGGAGAATTAAATG 1663
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1610 CAGGCAGGAGGCGCAGAAGCAAAAAGGGGAAGGATAAGAATAACCAGGGAGAATTAA-TG 1668
Query 1664 -AAAAGAGCAGTGAAGCGGATGATACTCAATATGTAAATCGAGACATGGAGTCCCAGGAT 1722
||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct 1669 GAAAAGAGCAGTGAAGCGGATGATACTCCATATGTAAATCGAGACATGGAGGCGCAGGAT 1728
Query 1723 TACAAGAAGGCTCCCAGATCAAAGAAATCCACCAGAGGAATGAAAACCAAGGGCACAACG 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 TACAAGAAGGCTCCCAGATCAAAGAAATCCACCAGAGGAATGAAAACCAAGGGCACAACG 1788
Query 1783 AAGAAAAACAGTAGCAATGAATGTGATAGATGTGGAGAGGAGTTTGAGTCGAGAACAAAA 1842
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1789 AAGAAAAACAGTGGTAATGAATGCAATAGATGTGGAGAGGAGTTTGAGTCGAGAACAAAA 1848
Query 1843 CTACACAAGCACTTGGCTGATAGTGGTCATGCGACAGTGAAATCCCGATGA 1893
||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1849 CTACACAAGCATTTGGCTGATAGCGGTCATGCGACAGTGAAATCCCGATGA 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5