BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74270.1
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476564 jgi|Araly1|476564|fgenesh2_kg.2__1694__AT1G74270.1 926 0.0
> Ahg476564 jgi|Araly1|476564|fgenesh2_kg.2__1694__AT1G74270.1
Length=555
Score = 926 bits (501), Expect = 0.0
Identities = 536/553 (97%), Gaps = 2/553 (0%)
Strand=Plus/Plus
Query 1 AGCAGCCTTTGGATATTCGGCGGAATCGAAAATGGTCAAGGGACGCCAAGGAGAACGAGT 60
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AGCAGACTTTGGATATTCGGCGGAATCGAAAATGGTGAAGGGACGCCAAGGAGAACGAGT 60
Query 61 CAGACTCTACGTGAGGGGAACCATCCTCGGATACAAAAGGTCGAAGTCCAACCAGTATCC 120
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 61 CAGACTCTACGTGAGAGGAACCATCCTCGGATACAAAAGGTCAAAGTCTAACCAGTATCC 120
Query 121 AAACACGTCCCTCGTCCAGATCGAAGGAGTTAACACTCAGGAGGAGGTAAACTGGTACAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAACACGTCCCTCGTCCAGATCGAAGGAGTTAACACTCAGGAGGAGGTAAACTGGTACAA 180
Query 181 GGGAAAGAGGATGGCTTACATCTACAAGGCTAAGACAAAGAAGAACGGTAGCCACTACCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGAAAGAGGATGGCTTACATCTACAAGGCTAAGACAAAGAAGAACGGTAGCCACTACCG 240
Query 241 CTGTATCTGGGGAAAGGTTACCAGGCCTCACGGTAACAGCGGTGTTGTCCGTGCCAAATT 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGCATCTGGGGAAAGGTTACCAGGCCTCACGGTAACAGCGGTGTTGTCCGTGCCAAATT 300
Query 301 CACATCCAACCTTCCTCCCAAGTCCATGGGAAGCAGAGTGAGAGTCTTCATGTATCCGAG 360
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 CACATCCAACCTGCCTCCTAAGTCCATGGGAAGCAGGGTGAGAGTCTTCATGTATCCGAG 360
Query 361 TAACATATGAAGCAA-TGCAAAAATGGCTTAAACTTATAATTTAGCCGCCTTGGTTTTGT 419
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TAACATATGAAGCAAATGCAAAA-TGGCTTAAACTTATAATTTAGCCGCCTTGGTTTTGT 419
Query 420 TCACTAGTTTGTTATTTTGTATTTTGATATTGAAAGCATTTCCTTTCTTTGTTTGAAGTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCACTAGTTTGTTATTTTGTATTTTGATATTGAAAGCATTTCCTTTCTTTGTTTGAAGTG 479
Query 480 TTTGGAGATTCTCTAAATTGACTTTGATCATGGATCCGGTTTTTCATCCCAAATTAGACT 539
|||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |
Sbjct 480 TTTGGAGATTCTCTAAATTGACTTTGCTCATGGATCTGGTTTTTCATCACAAATTAGAAT 539
Query 540 CCCTTTTCCCCTT 552
|| ||||||||||
Sbjct 540 CCTTTTTCCCCTT 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454398113
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5