BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74280.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909050 jgi|Araly1|909050|Al_scaffold_0002_2131 1443 0.0
> Ahg909050 jgi|Araly1|909050|Al_scaffold_0002_2131
Length=1101
Score = 1443 bits (781), Expect = 0.0
Identities = 975/1069 (91%), Gaps = 12/1069 (1%)
Strand=Plus/Plus
Query 108 TTCATCAAGGAACAGCTCATTAAAGCCATGGC-CTCGaaaaaaaTTTCTTTTTCCTTC-T 165
|||| ||||||| |||||| ||||| | | | ||||||| | |||||| |||| ||
Sbjct 12 TTCAGCAAGGAAAAGCTCAATAAAGGC-TTCCTCTCGAAAGAGTTTTCTTCTTCCCTCAA 70
Query 166 GTTGTGATTGTCATTGTTGGGATAATCGTGGCGTTTACTTATCAGTCCAAGTTGAAACCA 225
| |||||| ||||||||||||||||| ||||||| ||||| ||||| |||||||||||
Sbjct 71 G-TGTGATCATCATTGTTGGGATAATCTTGGCGTTGACTTACCAGTCGAAGTTGAAACCT 129
Query 226 CCTCCGCCGAAGCTATGTGGCTCCT-CCGGTGGTCCACCGATCACAGCGCCGCGGATAAA 284
|||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||
Sbjct 130 CCTCCGCCGAAGCTATGTGGCT-CTCCCGGTGGTCCACCTATCACAGCGCCGAGGATAAA 188
Query 285 GCTTCA-AGATGGGAGGTATTTGGCTTACAAAGAGCATGGACTTCCAAGAGAGAAAGCTA 343
|| | | |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 189 GC-TGAGAGATGGAAGGCATTTGGCATACAAAGAGCATGGACTTCCAAGAGAGAAAGCTA 247
Query 344 ACCGCAAAATCGTCTTCATCCATGGATCCGATTGTTGTAGACACGATGCCGTTTTCGCCA 403
| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 248 ATCGCAAAATCGTATTCATCCATGGATCCGATTGCTGTAGACACGACGCCGTTTTCGCCA 307
Query 404 CTCTGCTTTCTCCGGATTTAGTAGAGGAACTAGGTGTATATATGGTTTCATTCGACAGAC 463
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 308 CTCTCCTATCTCCGGATTTAGTAGAGGAACTAGGTGTATATATGGTTTCATTCGATAGAC 367
Query 464 CGGGCTATTGTGAGAGTGATCCGCATCCAAGTCGTACACCGCGAAGCTTGGTTTCGGATA 523
||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 368 CGGGCTATTGTCAGAGTGATCCGCATCCAAATCGTACACCTCGAAGCTTGGTTTCGGACA 427
Query 524 TTGAAGAGCTAGCTGATCAGTTGAGTCTAGGATCGAAATTTTATGTGCTCGGGTACTCGA 583
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 428 TTGAAGAGCTCGCTGATCAATTGAGTCTAGGGTCGAAATTTTATGTGCTCGGGTACTCGA 487
Query 584 TGGGAGGACAAGCAGCATGGGGATGTCTTAAATACATTCCTCATAGGTTAGCCGGAGTAA 643
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TGGGGGGACAAGCAGCATGGGGATGTCTTAAATACATTCCTCATAGGTTAGCCGGAGTAA 547
Query 644 CACTAGTTGCTCCAGTGGTTAACTATTATTGGAAGAACTTACCTTTGAACGTTTCCACTG 703
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 548 CACTAGTTGCTCCGGTGGTTAACTATTATTGGAGGAACTTACCTTTGAACGTTTCTACTG 607
Query 704 AAGGTTTTAACTTTCAACAAAAGAGAGATCAATTGGCAGTTCGTGTTGCTCACTATACTC 763
|||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 608 AAGGATTTAACTTGCAACAAAAGAGAGATCAATGGGCAGTTCGTGTTGCTCACTATGCTC 667
Query 764 CTTGGCTTATCTATTGGTGGAACACACAAAAATGGTTCCCTGGTTCGAGTATTGCAAACC 823
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 668 CTTGGCTTATCTATTGGTGGAATACACAAAAATGGTTCCCGGGTTCGAGTATTGCGAACC 727
Query 824 GAGATCACAGTCTCTTGGCACAGCCGGATAAAGATATCATTTCGAAGCTTGGTTCTTCGA 883
||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |
Sbjct 728 GAGATCACAGTCTCTTGTCACAGCCGGATAGAGATATCATTTCAAAGCTTGGTTCTTCTA 787
Query 884 GGAAACCACATTGGGCAGAGGTAAGGCAGCAAGGAATACATGAGAGTATT-AACCGTGAC 942
||||||||||||||| ||| |||||||| |||||||||||||||||| || ||||| |||
Sbjct 788 GGAAACCACATTGGGAAGAAGTAAGGCAACAAGGAATACATGAGAGT-TTCAACCGCGAC 846
Query 943 ATGATCGTTG-GTTTTGGGAACTGGGAATTTGGTCCTTTAGACCTCGAGAATCCGTTTTT 1001
|||||||| | | |||||||| ||||| |||| |||| |||| |||||||||||||||||
Sbjct 847 ATGATCGT-GAGATTTGGGAATTGGGAGTTTGATCCTATAGAACTCGAGAATCCGTTTTT 905
Query 1002 GAATAAGGAAGGCTCTGTGCATTTGTGGCAAGGAGATGAGGACATGTTAGTACCTGCGAA 1061
||| || ||||||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 906 GAACAATAAAGGCTCTGTGCATTTGTGGCAAGGGGATGAGGACATGTTAGTGCCTGTGAC 965
Query 1062 GCTGCAGCGTTACCTTGCTCATCAGCTTCCATGGGTTCACTATCATGAGGTTCCGAGAAG 1121
|||||| |||||| |||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct 966 GCTGCAACGTTACATTGCTCATAAGCTTCCTTGGCTTCACTATCATGAGGTTCCGAGAAG 1025
Query 1122 TGGCCACTTCTTCCACTACACTAAAGGTGTAGTTGATGACATTGTAAAG 1170
|||||||||||||| || | |||||||||| |||||||| ||||| |||
Sbjct 1026 TGGCCACTTCTTCCCCTTCGCTAAAGGTGTGGTTGATGAGATTGTTAAG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5