BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74320.1
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926813 jgi|Araly1|926813|scaffold_202374.1 1792 0.0
> Ahg926813 jgi|Araly1|926813|scaffold_202374.1
Length=1090
Score = 1792 bits (970), Expect = 0.0
Identities = 1052/1092 (96%), Gaps = 3/1092 (0%)
Strand=Plus/Plus
Query 216 TGTGTGTGGCATTCAAATGACGATGGGTGGTACTGAAAAGAATGTAGAGAATAAACAATA 275
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1 TGTGTGTGGCAATCAAATGACGATGGATGGTACTGAAAAGGATGTAGAGAATAAACAATA 60
Query 276 TCGTTTGCCTCGAGAAGTCAAGGAAGCTTTACAAGCAATAGCATCAGAGTGGGAAGATGT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGTTTGCCTCGAGAAGTCAAGGAAGCTTTACAAGCAATAGCATCAGAGTGGGAAGATGT 120
Query 336 GATTGATTCAAAGGCTCTGCAAGTTATTCCTTTAAAAGGTGCAATGACAAATGAGGTGTT 395
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 121 GATTGATTCAAAGGCTCTGCAAGTTATTCCTTTAAAAGGTGCAATGACTAATGAGGTCTT 180
Query 396 TCAGATCAAATGGCCAACTAGGGAAAAAGGTCCTTCTCGTAAGGTTTTGGTTAGGATTTA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAGATCAAATGGCCAACTAGGGAAAAAGGTCCTTCTCGTAAGGTTTTGGTTAGGATTTA 240
Query 456 TGGTGAAGGTGTTGAGATTTTCTTTGATCGTGAGGATGAGATCAGGACATTTGAGTTCAT 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 TGGTGAAGGTGTTGAGATTTTCTTTGATCGTGAGGATGAGATCAGGACATTTGAGTTTAT 300
Query 516 GTCGAAGCATGGTCATGGACCTTTGTTGTTAGGTCGGTTTGGTAATGGTCGTATCGAAGA 575
||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 301 GTCAAAGCATGGTCATGGACCATTGTTGTTAGGACGGTTTGGCAATGGTCGTATCGAAGA 360
Query 576 GTTCCTCCATGCACGGACCCTATCTGCTTGTGACTTGCGTGATCCTGAAATATCTGGTCG 635
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTCCTCCATGCGCGGACCTTATCTGCTTGTGACTTGCGTGATCCTGAAATATCTGGTCG 420
Query 636 AATAGCAACTAGGATGAAGGAGTTTCATGGTCTTGAAATGCCTGGTGCGAAAAAGGCTTT 695
|||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 421 AATAGCAACTAGAATGAAGGAGTTTCACGGTCTTGAAATGCCTGGTGTGAAGAAGGCTTT 480
Query 696 GCTTTGGGACAGATTACGAAATTGGCTCACTGCATGCAAGAGACTGGCTTCACCAGAAGA 755
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTTTGGGACAGATTACGAAATTGGCTCACTGCATGCAAGAGACTGGCTTCACCAGAAGA 540
Query 756 AGCTAAGTCCTTTCGTCTCGATGTTATGGAGATGGAAATTAATATGCTTGAGAAATCTCT 815
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 AGCTAAGTCTTTTCGTCTCGATGTTATGGAGATGGAAATTAATTTGCTTGAGAAATCTCT 600
Query 816 CTTTGACAATGATGAAAATATTGGATTTTGCCACAATGATTTACAGTATGGGAACATCAT 875
|| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 601 CTGTAACAATGATGAAAATATTGGATTTTGCCACAATGATTTACAGTATGGAAACATAAT 660
Query 876 GATGGATGAAGAGACCAAAGCAATAACCATCATTGATTATGAATATTCATGCTATAATCC 935
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 661 GATGGATGAAGAAACCAAAGCAATCACCATCATTGATTATGAATATTCATGCTACAATCC 720
Query 936 TGTGGCTTATGACATTGCCAATCACTTCTGTGAGATGGCTGCCGATTACCACACTGAAAC 995
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGTGGCATATGACATTGCCAATCACTTCTGTGAGATGGCTGCCGATTACCACACTGAAAC 780
Query 996 ACCTCACATCATGGATTATAGTAAATACCCTGGTGTGGAGGAGCGACAAAGATTTCTGAA 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACCTCACATCATGGATTATAGTAAATACCCTGGTGTGGAGGAGCGACAAAGATTTCTGAA 840
Query 1056 AACATATATGAGTTATTCAGATGAAAAGCCCAGCGATACTATGGTCAAAAAACTCCTAGA 1115
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 841 AACATATTTGAGTTATTCAGGTGAAGAGCCCAGCGATACTATGGTCGAAAAACTCCTAGA 900
Query 1116 AGACGTTGAGAAATATACACTTGCTAGTCATCTAATTTGGGGTTTATGGGGAATTATATC 1175
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 AGACGTTGAGAAATATACACTTGCTAGTCATCTAACTTGGGGTTTATGGGGAATTATATC 960
Query 1176 GGAACATGTGAATGAAATCGACTTTGACTACATGGAGTATGCAAGACAAAGGTTCGAGCA 1235
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 961 GGAACATGTGAATGAAATCGACTTCGACTACATGGAGTACGCAAGACAAAGGTTTGAGCA 1020
Query 1236 GTATTGGTTAACAAAGCCGAGGCTCCTTGCAG-CTTCCGAACACAAGTAAATTTCTATGG 1294
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1021 GTATTGGTTAACAAAGCCGAGGCTCCTTG-AGGCTTCCGAACACAAGTAA-TTTCTATGG 1078
Query 1295 ACCCAACCCAAG 1306
|| ||| |||||
Sbjct 1079 ACACAATCCAAG 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59382691955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5