BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74340.1
Length=529
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316373 jgi|Araly1|316373|fgenesh1_pm.C_scaffold_2001406 418 2e-116
> Ahg316373 jgi|Araly1|316373|fgenesh1_pm.C_scaffold_2001406
Length=243
Score = 418 bits (226), Expect = 2e-116
Identities = 236/241 (98%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 122 ATGGAATTAGCGGATCGAGCAGTCGGGCTTCTACTATCTTCAATCAGCTTGTCCATATTC 181
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAATTAGCGGATCGAGCAGTCGGGCTTCTACTATCTTCAATCAGCTTATCCATATTC 60
Query 182 ACGTACTATACTTTTTGGGTCATCATCCTGCCATTTGTAGATAGTGATCACTTCATCCAC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGTACTATACTTTTTGGGTCATCATCCTGCCATTTGTAGATAGTGATCACTTCATCCAC 120
Query 242 AAGTACTTCTTACCCCAAGACTATGCCATTCTCGTACCTGTCTTTGCCGGCATAGCTCTT 301
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 AAGTACTTCTTGCCCCAAGACTATGCCATTCTCGTACCTGTGTTTGCCGGCATAGCTCTC 180
Query 302 CTCTCTCTCATTTCCGTATTCATCGGCATGGTCATGCTCAAATCCAAAAAGAAGAAGGCT 361
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CTCTCTCTCATTTCCGTATTCATCGGCATGGTCATGCTCAAATCTAAAAAGAAGAAGGCT 240
Query 362 T 362
|
Sbjct 241 T 241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19268572445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5