BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G74370.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476570 jgi|Araly1|476570|fgenesh2_kg.2__1700__AT1G74370.1 1561 0.0
> Ahg476570 jgi|Araly1|476570|fgenesh2_kg.2__1700__AT1G74370.1
Length=1119
Score = 1561 bits (845), Expect = 0.0
Identities = 1043/1135 (92%), Gaps = 28/1135 (2%)
Strand=Plus/Plus
Query 1 GGCGGAAACATTGAAAGGCGTTTCAGAGTCACCATGTTTTACGACGCGTGTCTCTTTTTC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GGCGGAAACATTGAAAGGCGTTTCAGAGTCACCATCTTTTACGACGCGTGTCTCTTTTTC 60
Query 61 AGCCGGTTTTCTTC-TCGCTGGTTACATCAGAGCTTCGGAGATATTATATAACTCAACGA 119
|| |||||||| || ||||| ||||||||||||||| | ||| ||||||| ||||||||
Sbjct 61 AG-CGGTTTTC-TCGTCGCTACTTACATCAGAGCTTC-G-GAT-TTATATATCTCAACGA 115
Query 120 CGTAGCTGTTGCAttt-tttgtttttGCAATGATCTTCATCTTCATGACCGGATAAACTC 178
||| |||||| | ||| ||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 116 CGTCGCTGTT-CCTTTATTTTTTTTTCCAATGACCTTCATCTTCATGACCGGATAAACTC 174
Query 179 TT--AGAGAAAGATTC-AAAGTGATTATC-TT-T-GTGGATC-CCTCCATTGCTATGTGG 231
|| | |||||||||| |||||||||||| || | ||||| | ||||||||| |||||||
Sbjct 175 TTGCAAAGAAAGATTCAAAAGTGATTATCTTTGTGGTGGA-CGCCTCCATTGTTATGTGG 233
Query 232 AATTTAGCTTCAAAATCGATCAGAGAAGGTTTTATATCGA-AGGGAGAAGAAGCTGCTAC 290
|||||||||||||||||||||| |||||| |||| ||| | | |||||||||||||||||
Sbjct 234 AATTTAGCTTCAAAATCGATCAAAGAAGGCTTTAAATC-ACAAGGAGAAGAAGCTGCTAC 292
Query 291 AAAACCAAGAAGAGCTA-CTTTAGATAGATCAGGAGATGGAAGAAAGACAACAAAGGAAG 349
||||| ||||| | | | ||| |||| ||||||||||||||||| |||||| |||||||
Sbjct 293 AAAACAAAGAAAATC-ACCTTCAGATTCATCAGGAGATGGAAGAAGGACAACGAAGGAAG 351
Query 350 AAAAATTGGAGTGTCCCATTTGCTGGGAATCATTCAACGTTGTTGAGAATGTACCTTATG 409
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 352 AAAAATTGGAGTGTCCCATTTGTTGGGAATCATTCAACGTCGTTGAGAATGTACCTTATG 411
Query 410 TCTTATGGTGTGGTCATACAATCTGCAAGTACTGTCTCTTAGGGCTTCAACGTGCCATTG 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 412 TCTTATGGTGTGGTCATACAATCTGCAAGTACTGTCTCTTAGGGCTTCAACGTGCCGTTG 471
Query 470 TCATCAAATCCTCTGCTTTACCATTCCAGCTTCCCTTCTTCGTTGCTTGCCCTTGGTGCA 529
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 472 TCATCAAATCCTCAGCTTTACCTTTCCAGCTTCCCTTCTTCGTTGCTTGCCCTTGGTGCA 531
Query 530 ATATTCTCTCTTTAAGGCTGGTTTGCAATGGAACCATCA-GATTTCCTTCCAAGAACTTT 588
|||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 532 ATATACTCTCTTTAAGGCTGGTTTGCAATGGAACCGTCAAG-TTTCCTTCCAAGAACTTT 590
Query 589 TACCTTCTGTGGATGGTAGAAAGCATGAATGGCTCCAGATCGGAGGCACCCAGCGACAAC 648
|||||||| |||||||| |||||||||||||||| |||||| || || | ||||||||||
Sbjct 591 TACCTTCTATGGATGGTCGAAAGCATGAATGGCTGCAGATCTGAAGCGCGCAGCGACAAC 650
Query 649 AAAAGGGTTGCTTCAGGGCAGAGAGACTTGAGAAATAGGTGTGATGGAGTGAGTAATACC 708
||||| || |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 651 AAAAGAGTCACTTCAGGGCA------CTTGAGAAAGAGGTGTGATGGAGTGAGTAATACC 704
Query 709 GCCTTGGGTGATGAAGGGTTGCTGGACAATCGCAGCTGGTGGAATGGTGTGACCAGAGGA 768
|||| || ||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 705 GCCTCGGATGATGAACGGTTACTGGACAATCGCAGCTGGTGGAATGGTCTGACCAGAGGA 764
Query 769 TTCTTCAGAACTGGGAGGCTCCATGACTCGGTACGTAAGTCAATGGCTCTTGTTGCTCAT 828
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 765 TTCTTCAGAACTGGGAGACTCCATGACTCGGTATGTAAGTCAATGGCTCTTGTTGCTCAT 824
Query 829 TTGTTGGCTAAGTTTCCTCTGGTAGTCATATTCCTGTTGATGGCTTTATATGCAATCCCT 888
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TTGCTGTCTAAGTTTCCTTTGGTAGTCATATTCCTGTTGATGGCTTTATATGCAATCCCT 884
Query 889 GTGAGTGCTGCAGTTCTCGGGGTTTATTTCTTTGTTACGTTTGCTTTGGCTGTCCCGTCG 948
||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 885 GTGAGTGCTGCAGTTCTTGGGCTTTATTTCTTTGTCACGTTTGCTTTGGCTGTCCCGTCT 944
Query 949 TTTCTCGTCCTTTATTTTGCCTTCCCGAGCTTAAACTGGCTGATCAGAGAGATTGCAACC 1008
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 945 TTTCTCGTCCTCTATTTCGCCTTCCCGAGCTTAAACTGGCTGATCAGAGAGATTGCAGCC 1004
Query 1009 TGACTCATTGTACTGTTTCTTTCTTCCTGTATGTTTCCTGACTTGTAAGAAACACGAGAT 1068
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1005 TGACTCATTGTACTGTTTCTTTCTTCCTTTATGTTTCCTGACTTGTAAGAAACTTGAGAT 1064
Query 1069 AGAGCCAACGTTGTTTACACTCAATATAGACAAGAAGAAGAGAAGATCTTTATTT 1123
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1065 AGAGCCAAAGATGTTTACATTCAATATAGACAAGAAGAAGAGAAGATCTTTATTT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5